Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1870 ATGACGATCCATTCGATAGTGATACAGAAGCTGCTGAGCACCAATGCACAGGTGGGTCGTAGAGTTGCAGCGCATCATTTCAAGATTTACACCTATGGCTTCCGCAACAAAATGGCCATTATCGATTCTGACAAGACCCTGATTTGCATGCGCAGTGCCTGCAACTTCATGGCTTCACTGGCCCGCCAAAACGGCCGTTTCATGTTCATCAACACCAATCCTCTTTTCGACGAGATCTTCGACCTCATGACCAAGAAGGTCGGTTCCTACGGCCCCTCCACCAACGCTCTCTGGCGCACCGGTGGCTTCTTGACGAACAGTTACAGTCCCAAGAAGTTCCGTTCTCGCAACAAAAAGCTCGTCTTTGGCCCCACTCAGCCTCCCGACTGCATTGTCATCTTTGACACTCAGAGGAAGTCTTCCGTCATCAACGAAGCTTTCAAGCTTCAAATTCCTGTTGTTGCTTTGGTCGACTCTGCCATGCCAATCGATTGTTATAAGCGCATTGCTTATCCTGTTCCCGCCAATGATTCTGTCCAGTTCGTTTATTTGTTCTGCAATTTGATTACCAAAACCTTGCTTCTGGAGAAGAAGAAAGCCGCTGTTGCTAATCCCGAAATTGAAACTCGAGAAGAAGCTCTACAAATTGAACAACGCAAGGGCAAGAGTGATTTGGCTAAGGTCGGCATAACCGTTTTCCCCTATGTTAATTTAACACCCTTACCCGAAGATATAGAAGAAACCAAGAAGCTTTTGGACAAGCTCGTTGTTTTGAAGTTCAATGGTGTCCCAGGAAGAAATATGGGTTTGGAAGGCCCTAAGTCTGCAATTGAGATTAGTGATGGACTGACATTTCTGGACTTGATTATTAACCAGATTGAGACCCTCAACTCCAGGTATGGTTGCAGGGTTCCATTGCTTCTTTTGAACAAAGATGACACTCATGATAGTATTGTAAAGGTTTTGGAAAAGCATTCAAAATCAAGCGTTGAAGTACACACTTTAAAGCAGGGTGAAAGTCTGGGGTTGAAATCATCCGGTGGACATTACAACAAAGAGGAAGTGCATCCATTTGACGATGTTGATACATTCTGTTCACTAATGACTGATGGAACCCTTGATTTATTATTGTCACAGGGTAAAGAGTATATCCTTGTGATGAAATCAGAAAATGTGGCTACAATCATTGATCCAAACATACTAAATCATTTGATGACAAATGATATTGAATACTGTATGGAGGTGACACCTAGCCATTCGTGTAATTTAATCTTAACTCCAATGAATTTTAAGCTTCAGGAGATTGCTCAAAATCAAGATAAACATTTGAAGGGCAATTTCAAACTCATTGATACAACAAACATGTGGGTTAATTTAAGAGCCATTAAGAAGCTTGGAGACACTGAAGAATTAAAGCACAAAAAATCCTCAGTTTTGAAGTTATTTGAGAAAGTGATTGGAGTCTCTGTGCCTGAAACACGTTTTCTTCCCTTGGATGCAACATCAGATTTACTAATTCTACAGTCAGATCTATACACTTGTAGAGAAGGTGTTCTAACCCGGAATCCAGCTAGAAGCAACCCTTCAAATCCTATGATAGACTTGGGACCTGAATTTGAAAAGGTTGGTGACTTCCAAAGTCGCTTCAAATCCATTCCAAGCATCAGTGGGCTGGTTAGTTTGATGGTGAGAGGTGATGTGTGGTTTGGAGCTGATATTACTTTAAAGGGGCAAGTGACTATTGCGGCAAAGCCTGGCTTGAAATTGGAAATTCCAGATGGCGTCGTAATTGAAAATAAGGAGATCAACGATCCTGCAGATATCTTAGGATGA 1833 0.4228 MTIHSIVIQKLLSTNAQVGRRVAAHHFKIYTYGFRNKMAIIDSDKTLICMRSACNFMASLARQNGRFMFINTNPLFDEIFDLMTKKVGSYGPSTNALWRTGGFLTNSYSPKKFRSRNKKLVFGPTQPPDCIVIFDTQRKSSVINEAFKLQIPVVALVDSAMPIDCYKRIAYPVPANDSVQFVYLFCNLITKTLLLEKKKAAVANPEIETREEALQIEQRKGKSDLAKVGITVFPYVNLTPLPEDIEETKKLLDKLVVLKFNGVPGRNMGLEGPKSAIEISDGLTFLDLIINQIETLNSRYGCRVPLLLLNKDDTHDSIVKVLEKHSKSSVEVHTLKQGESLGLKSSGGHYNKEEVHPFDDVDTFCSLMTDGTLDLLLSQGKEYILVMKSENVATIIDPNILNHLMTNDIEYCMEVTPSHSCNLILTPMNFKLQEIAQNQDKHLKGNFKLIDTTNMWVNLRAIKKLGDTEELKHKKSSVLKLFEKVIGVSVPETRFLPLDATSDLLILQSDLYTCREGVLTRNPARSNPSNPMIDLGPEFEKVGDFQSRFKSIPSISGLVSLMVRGDVWFGADITLKGQVTIAAKPGLKLEIPDGVVIENKEINDPADILG* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1870 610 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 197 498 IPR029044 -
Apr5g1870 610 PANTHER - 1 608 IPR016267 GO:0003983|GO:0006011
Apr5g1870 610 CDD RPS2 11 194 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr5g1870 610 Pfam Ribosomal protein S2 11 108 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr5g1870 610 Pfam Ribosomal protein S2 125 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr5g1870 610 Pfam UTP--glucose-1-phosphate uridylyltransferase 235 576 IPR002618 GO:0070569
Apr5g1870 610 PANTHER UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 1 608 - -
Apr5g1870 610 PRINTS Ribosomal protein S2 signature 8 26 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr5g1870 610 PRINTS Ribosomal protein S2 signature 128 145 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr5g1870 610 PRINTS Ribosomal protein S2 signature 145 156 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr5g1870 610 PRINTS Ribosomal protein S2 signature 169 183 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr5g1870 610 SUPERFAMILY Nucleotide-diphospho-sugar transferases 235 584 IPR029044 -
Apr5g1870 610 Gene3D - 2 196 - -
Apr5g1870 610 Gene3D Hexapeptide repeat proteins 499 608 - -
Apr5g1870 610 SUPERFAMILY Ribosomal protein S2 8 200 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1870 Apr-Chr5 21778841 21786485 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1870 K00963 - gmx:100812583 945.651