Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1855 ATGAATCCCAATATGTTTGTTGATGATCCCACTCTTTTATTTTTCTCTAGCTGCAATCATTCCGACAAGTACAATCACATCATTCAATCTTTAACGCCAATTTCTCAGAACTTGGCACTTGAGTTTGGCGAACTGAAGGACAATGAGGTTGATCGTTATATCATATTACAGACCGAAAAACTCAGAATTTTGTTGCAAGAGCAAAGAGCACAACAAGTGGCAGAATTGTTAGAAAAGGTAGAATCGGACGCATTTTATATGTTAAGTCAGAAAGACGAGCAATTAGCACAAGCAGCAAAGAAAAGGATTGAGTTAGAAGAATTTTTGAGAAGGCTAGAAGCAGAAAATCAATCGTGGAGACGAGTGGCCCAAGAAAATGAAACTATGGTATTATCGCTACATAACGCTTTAGAACAGATGAAAGAAAGAGCTTCTCATGTGATGGCGATGGAAGATGTTGAATCCTGCTGTGATGAAATTAGGAGAGACATGGGAATGGAAGAACAAATTTGCAAAGGTTGTAATTCTCGAAGCTCGTGTTTTATGTTCCTTCCTTGCAGACACCTTTGTTCTTGCAGAAATTGTGAGGCCTTTCTCCAAGCTTGTCCTGTATGCAGAACGCAAAAGAAGTATAGTATAGAAACTTTAATTTTTTAA 657 0.379 MNPNMFVDDPTLLFFSSCNHSDKYNHIIQSLTPISQNLALEFGELKDNEVDRYIILQTEKLRILLQEQRAQQVAELLEKVESDAFYMLSQKDEQLAQAAKKRIELEEFLRRLEAENQSWRRVAQENETMVLSLHNALEQMKERASHVMAMEDVESCCDEIRRDMGMEEQICKGCNSRSSCFMFLPCRHLCSCRNCEAFLQACPVCRTQKKYSIETLIF* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1855 218 Gene3D Death Domain, Fas 57 179 IPR011029 -
Apr5g1855 218 Coils Coil 95 129 - -
Apr5g1855 218 PIRSF SBP1_RNase_bind 16 218 IPR017066 -
Apr5g1855 218 Pfam Zinc finger, C3HC4 type (RING finger) 168 209 - -
Apr5g1855 218 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 24 217 IPR017066 -
Apr5g1855 218 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 24 217 - -
Apr5g1855 218 Gene3D - 180 214 - -
Apr5g1855 218 ProSiteProfiles Zinc finger RING-type profile. 171 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1855 Apr-Chr5 21665690 21666455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1855 127 208 Miscellaneous Gene Families AT4G39050 31.707 1.57e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1855 K19042 - gmx:100815248 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1855 5 21665690 21666455 Apr5g1855 5 21665690 21666455 ECH