Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1841 ATGTTGTTTAAAGGCAGAATTATCTCCGTTTTCTTAAATTTATACTGTGCAAGTGCATCTTCTGGTTTTGATGGGCCCCTATATGACTCCACTGCTTACACTGAGTGCAAAGAGAAGGCAGAGGAGCCACTTTACGGAGGAGGACTTCTCAAAAGCGTGCTTTTGTCTGTTAATACTAATAGCTGCATGCCTTCGCTTGTTCTGGACAATAATCTCACTCAAGGCACCATTTACTCTTTCTCCGTATGGGTGAGAGTTGAAGACTCAAGAAGTTCAGCTAAGGTAAGGGCCAGCCTGCAAACGGAGAAAGAGGTATATGATTGCATAGGGACAGTTTCTGCCAAGCGCGGATGCTGGTCATTTCTCAAAGGTGGATTTGTTCTCAATTGGCCTTCCAATTTTTCTACAATCTTCTTACAGAATGTGGACAGAAAAGATGTCAACATAGATATTGTTAGCCCATCACTCCAGCCATTTACTAAAGAACAATGGAGAACCAATCAGCAGTATATAATCAATACTCAAAGAAAGCGTGCTGTCACTATTCATGTGTCAGATAGTAACGGGAGGAGATTGCAAGGAGCTGCCATCTTTGTGAAGCAAATCTCAAAAGATTTCCCTATTGGATCGGCAATAGCAAAGAGCATCCTTGGCAACTTGCCCTATCAGAATTGGTTCGTGAAGCGGTTCAATGCGGCAGTCTTTGAAAATGAACTAAAATGGTACGCCACGGAGCCTCATCAAGGCAAGGTCAATTACACCATTTCAGACCAGATGATGCAATTTGTTAGAGCAAACAAAATCATAGCCAGAGGGCACAATATATTCTGGGAAGACCCTAAATACGCCCCACCATGGGTTCTTAACCTTACTGGCATCCAGTTACAATCTGCTGTGAATTCCCGAATACTAAGTCTCATGAACCAATACAAGGACGAGTTCATACACTGGGATGTCAGCAATGAAATGCTTCATTTTGATTTTTATGAGCAAAGGCTTGGACCTGACGCCACATTGCATTTCTTCCAGACAGCACACAAATCAGATCCTTTAGCAACGCTGTTCATGAACGACTTTAACGTGGTGGAAACATGCAATGATGTGAATTCCACTGTGGACGCTTATATCTCGAGGATAAGAGAACTACAACAAAATGGTGTCTTTATGGATGGAATTGGCTTGGAGGGTCACTTCACAATACCCAATCCTCCCCTTATCAGAGCTATCTTAGACAAGTTGGCAACACTTGGCCTTCCCATTTGGCTTACTGAGGTTGACATAAGCAAAACACTTGATAAAGATACACAGGCAAATTATTTGGAGCAAGTGTTGAGGGAAGGGTTCTCACATCCTTCGGTGAATGGGATCATGCTTTGGACTGCATTTCGGCCTAATGGATGCTTCCAAATGTGCCTCACAGACAGTAATTTCAAGAACCTCCCAGCAGGTGATGTGGTGGACAAGCTTCTTCAAGAGTGGCAAAGTGGTCGCGTAGAGGGAGTCACAGATGGGCATGGTTCCTATAGCTTTTATGGGTTCTTGGGAGAATATAGAATTAGTGTTAAGTATGGTAACAGGACTAAAATTTCAACCTTCTCGCTCTCTCGAGGTCAAGAAACTCGACATTTTGATATTACCTTGTGA 1644 0.4294 MLFKGRIISVFLNLYCASASSGFDGPLYDSTAYTECKEKAEEPLYGGGLLKSVLLSVNTNSCMPSLVLDNNLTQGTIYSFSVWVRVEDSRSSAKVRASLQTEKEVYDCIGTVSAKRGCWSFLKGGFVLNWPSNFSTIFLQNVDRKDVNIDIVSPSLQPFTKEQWRTNQQYIINTQRKRAVTIHVSDSNGRRLQGAAIFVKQISKDFPIGSAIAKSILGNLPYQNWFVKRFNAAVFENELKWYATEPHQGKVNYTISDQMMQFVRANKIIARGHNIFWEDPKYAPPWVLNLTGIQLQSAVNSRILSLMNQYKDEFIHWDVSNEMLHFDFYEQRLGPDATLHFFQTAHKSDPLATLFMNDFNVVETCNDVNSTVDAYISRIRELQQNGVFMDGIGLEGHFTIPNPPLIRAILDKLATLGLPIWLTEVDISKTLDKDTQANYLEQVLREGFSHPSVNGIMLWTAFRPNGCFQMCLTDSNFKNLPAGDVVDKLLQEWQSGRVEGVTDGHGSYSFYGFLGEYRISVKYGNRTKISTFSLSRGQETRHFDITL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1841 547 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 193 489 IPR001000 GO:0004553|GO:0005975
Apr5g1841 547 Pfam Glycosyl hydrolase family 10 201 460 IPR001000 GO:0004553|GO:0005975
Apr5g1841 547 PANTHER GLYCOSYL HYDROLASE 9 546 IPR044846 GO:0004553|GO:0005975
Apr5g1841 547 SUPERFAMILY (Trans)glycosidases 192 497 IPR017853 -
Apr5g1841 547 Coils Coil 365 385 - -
Apr5g1841 547 SMART glyco_10 239 490 IPR001000 GO:0004553|GO:0005975
Apr5g1841 547 Gene3D - 38 155 - -
Apr5g1841 547 PANTHER GLYCOSYL HYDROLASE FAMILY 10 PROTEIN 9 546 - -
Apr5g1841 547 Gene3D Glycosidases 196 502 - -
Apr5g1841 547 SUPERFAMILY Galactose-binding domain-like 65 139 IPR008979 -
Apr5g1841 547 PRINTS Glycosyl hydrolase family 10 signature 270 282 IPR001000 GO:0004553|GO:0005975
Apr5g1841 547 PRINTS Glycosyl hydrolase family 10 signature 314 325 IPR001000 GO:0004553|GO:0005975
Apr5g1841 547 PRINTS Glycosyl hydrolase family 10 signature 352 363 IPR001000 GO:0004553|GO:0005975
Apr5g1841 547 PRINTS Glycosyl hydrolase family 10 signature 385 397 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1841 Apr-Chr5 21575778 21580809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1841 17 547 Glycoside Hydrolase AT4G38650 64.510 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1841 - - gmx:100806005 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1841 5 21575778 21580809 Apr5g1841 5 21575778 21580809 ECH