Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1838 ATGTCGAGCATCGTCAAGGAGATCCTGGCGAGCCCGATACAAATGGCGGACCAGGTTTCTAAGATGTCTGAAGAGGTACAGAATTTCAGACAGGAATGTCTCGAGCTTAAGGCCAAAACAGAGAAGCTCGCAGGTCTCCTCCGCCAAGCCGCCAGGAACAGCAGCGACCTTTACGAGCGTCCCACCAGACGCATCATCGACGACACAGAACAAGTTCTCGACAAAGCCCTCGTACTCGTCACAAAATGTCGCGCCAACACCGTCATCAAGCGTCTATTCACAATCATCCCAACCACCGCCTTCCGCAAAACCTCCATGCAGCTCGAGAATTCCATCGGCGACGTCCAGTGGCTCCTCCGAGTCTCCGCTTCCGCCGACGAACGCGACGACGAGTATCTGGGGCTTCCCCCCATCGCCGCCAACGAACCCATTCTCTGCCTCATATGGGAACAGATCGCCATTTTGCTCTCTGGCTGTTCCTTGGACGAACGTTCCGACGCTGCAGCTTCCTTGGTTTCCCTTGCACGCGACAACGACCGTTACGGGAAGCTCATCATCGAGGAAGGTGGAGTACCCCCGCTCCTGAAATTGTTGAAAGAAGGGCGATTGGAGGGTCAAGAAAACGCTGCCAGAGCCATTGGGTTGCTGGGGAAGGATCCGGAAAGCGTGGAGCACATTGTGAATGCTGGTGTTTGCTCGGTTTTTGCGAAAGTCCTGAAAGAGGGTCACATGAAGGTTCAGATGGTGGTGGCGTGGGCTATTTCGGAGCTTGCGGCGAATCACCCCAAATGCCAGGATCACTTCTCCCAGAACAATGCCATACGCTTGCTGGTTAGCCATCTGGCGTTCGAGACCATTCAAGAGCATAGCAAGTATGCCATTGCCAATAAGCACAAGAGCATTCATTCGCTTCTAATGGCGAGTAACACAGAGAAAGATGAGATAAACAGGAGGCATGAAGAGGATGATAAACAGATTCACCACCCAATGGAGAACCAAACATCAAGCCACATGCACAATGTGGTGTCCAACACCATGGCCATTAAGGGCATGGGCCAGGGAAATTATGGCAAGGGTAACAATACAAAGAAACAGCAGCAGCAGAACCATGGGACTGGGAATTCGCACGTGTCAATTGCTGTGACGAGTATTAAGGGTAGGGAATTCGAAGACCCTGTTACCAAGGCTGAGATGAAGACCATGGCAGCCAGGGCACTATGGCAACTCTCTAGGGGAAACTTGACCGTGTGTCGTAGCATAACAGAGTCTAGAGCTCTTCTTTGTTTCGTGGTTCTGTTGGAAAAAGGCCCCGAAGACGTGCAATCCTATTCAGCAATGGCGTTGATGGAAATCACATGTGTGGCAGAACAACATGCAGAGTTGAGACGCTCTGCTTTCAAGCCAACTTCCCCTGCTGCCAAGGCTATGGTGGAACAGCTTATCAAGATAATTGAGAAAGAAGACTCTAATCTACTCATTCCTTGCATCAGAGCTATTGGGAATTTGGCGAGGACTTTCAGAGCAACGGAAAGCAGAATCATTGGGCCCTTGGTGAGGCTCCTTGACGAAAGAGAAGCCCAAGTTTCCATGGAAGCCGCTATCGCACTCAACAAGTTCGCTTGTACGGACAATTATCTCCACGAAAATCACTGCAACGCCATCATAGAGGCAGGGGGTGCCAAACACTTGATTCAGCTGGTTTACTTTGGGGAGCAAATGGTTCAGATTCCTTCCGTCACTCTTCTCTGTTACATAGCGCTACACGTCCCCAAAAGCGATACCCTTGCGCAGGAAGAGGTCCTCATTGTTCTTGAGTGGTGCACGAAACAGGGCCATCTCGCCGAAGAACCTTCCATTAAACCACTGTTACCAGAAGCCAAAAGTAGGTTGGAACTGTACCAATCCAGAGGAAGAGGATTCCGCTGA 1926 0.5099 MSSIVKEILASPIQMADQVSKMSEEVQNFRQECLELKAKTEKLAGLLRQAARNSSDLYERPTRRIIDDTEQVLDKALVLVTKCRANTVIKRLFTIIPTTAFRKTSMQLENSIGDVQWLLRVSASADERDDEYLGLPPIAANEPILCLIWEQIAILLSGCSLDERSDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLLKEGRLEGQENAARAIGLLGKDPESVEHIVNAGVCSVFAKVLKEGHMKVQMVVAWAISELAANHPKCQDHFSQNNAIRLLVSHLAFETIQEHSKYAIANKHKSIHSLLMASNTEKDEINRRHEEDDKQIHHPMENQTSSHMHNVVSNTMAIKGMGQGNYGKGNNTKKQQQQNHGTGNSHVSIAVTSIKGREFEDPVTKAEMKTMAARALWQLSRGNLTVCRSITESRALLCFVVLLEKGPEDVQSYSAMALMEITCVAEQHAELRRSAFKPTSPAAKAMVEQLIKIIEKEDSNLLIPCIRAIGNLARTFRATESRIIGPLVRLLDEREAQVSMEAAIALNKFACTDNYLHENHCNAIIEAGGAKHLIQLVYFGEQMVQIPSVTLLCYIALHVPKSDTLAQEEVLIVLEWCTKQGHLAEEPSIKPLLPEAKSRLELYQSRGRGFR* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1838 641 SUPERFAMILY ARM repeat 154 603 IPR016024 -
Apr5g1838 641 Coils Coil 19 39 - -
Apr5g1838 641 Gene3D - 3 121 IPR036537 GO:0007166
Apr5g1838 641 PANTHER ARMADILLO REPEAT ONLY 4 1 640 - -
Apr5g1838 641 PANTHER ARMADILLO REPEAT ONLY 1 1 640 - -
Apr5g1838 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 189 231 IPR000225 GO:0005515
Apr5g1838 641 Gene3D - 466 612 IPR011989 -
Apr5g1838 641 SMART arm_5 219 259 IPR000225 GO:0005515
Apr5g1838 641 SMART arm_5 547 587 IPR000225 GO:0005515
Apr5g1838 641 SMART arm_5 413 453 IPR000225 GO:0005515
Apr5g1838 641 SMART arm_5 177 218 IPR000225 GO:0005515
Apr5g1838 641 SMART arm_5 469 504 IPR000225 GO:0005515
Apr5g1838 641 MobiDBLite consensus disorder prediction 352 374 - -
Apr5g1838 641 Pfam Armadillo/beta-catenin-like repeat 219 259 IPR000225 GO:0005515
Apr5g1838 641 Pfam Armadillo/beta-catenin-like repeat 184 214 IPR000225 GO:0005515
Apr5g1838 641 Gene3D - 150 339 IPR011989 -
Apr5g1838 641 Gene3D - 390 465 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1838 Apr-Chr5 21559353 21561281 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1838 - - gmx:100807066 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1838 5 21559353 21561281 Apr5g1838 5 21559353 21561281 ECH