Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1827 ATGGAGAGCAGCAGCAAGAGGAAAAGTGGTGGAAACGGAGAGATTCTAGATGGTTCCAACATTATGGAGTTGGTTGGGAACGAGCAAGTATTCAGCAACTTCGTGGACCATAAGTTTCATCAGTTGGATAAGGACAGAGATGGTAAGCTCTCAGTGAAGGAGCTTGAACCTGCTGTTGCTGACATCGGTGCTGCTCTTGGTTTGCCTGCTCAAGGCATTAGTCCTGATTCTGATCACATCTATTTTGAGGTCTTGAATGAATTCACCCATGGCAAGCAAGAAAAGGTGAGCAAGACTGAATTCAAAGAGGTTCTCTCAGACATTCTTTTGGGCATGGCTGCTGGACTGAAGCGAGACCCTATAGTTATACTCCGCATGGATGGGGAAGATCTCCTTGAGTTTGTTAATGGTCCAGGTTATGAAGCAGAGCTGGCATCTATTTTCTCTCAGATTGAGTCCCCCAGTGGATCACTTCGTGAACATGTAATTGAAGCTTTTGGAAGACTCACTGTTGATCAAGGAATTCCTCCTACATCAGATTCTTGGGTTTTCAACAACATTGTGGATCCAGCACTGTCTCAAGCTGGCCCTGCTTTGGACAAGCCTGTTACTCAAGAGACATTTTTGGAAGAATTTAAGAGAGTGGCATTGAGTGTGGTTGATTGTCTTAAAGAGAAACCTGCCATCGTTGCCCACAGTGAAAACACCTTTGATGGACGTGGTGTCAAGAGACTTTTATCCAACAAGTTTGAATTAGACAGGACATTGAACTTAGCTTTGGAGAATCTGCTCAAAGATCACAATGGAAAAATATCAAAGGACCATCTGCGGTTGGCACTAGATCTGGTGTCTCCATCTGCTGGTTTACCTCCAGTTGGAGCAATTGAAGAGATGGATAAGGTTATTGGTGAAGCCTTTAAGACGGTGAATGCAGATGATGGGAAGACAGTTAAAGAAGACGAATTCAAGAAAATTATAACTGAAATACTAGGGAGTATCATGTTGCAGTTAGAGGGCAATCCCATATCTGTTTCTTCAAATTCAGTTGTGCATGAGCCTTTAGGCTCATCTTCTACCCTTTTGCAGCCATCTTCTAGTGAAACTGCATGA 1110 0.4342 MESSSKRKSGGNGEILDGSNIMELVGNEQVFSNFVDHKFHQLDKDRDGKLSVKELEPAVADIGAALGLPAQGISPDSDHIYFEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRMDGEDLLEFVNGPGYEAELASIFSQIESPSGSLREHVIEAFGRLTVDQGIPPTSDSWVFNNIVDPALSQAGPALDKPVTQETFLEEFKRVALSVVDCLKEKPAIVAHSENTFDGRGVKRLLSNKFELDRTLNLALENLLKDHNGKISKDHLRLALDLVSPSAGLPPVGAIEEMDKVIGEAFKTVNADDGKTVKEDEFKKIITEILGSIMLQLEGNPISVSSNSVVHEPLGSSSTLLQPSSSETA* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1827 369 Gene3D - 35 332 - -
Apr5g1827 369 ProSiteProfiles EF-hand calcium-binding domain profile. 30 65 IPR002048 GO:0005509
Apr5g1827 369 ProSitePatterns EF-hand calcium-binding domain. 43 55 IPR018247 -
Apr5g1827 369 SUPERFAMILY EF-hand 38 340 IPR011992 -
Apr5g1827 369 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 5 368 - -
Apr5g1827 369 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 5 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1827 Apr-Chr5 21495953 21499481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1827 14 368 EF-hand Containing Proteins AT4G38810 66.574 1.47e-169 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1827 - - gmx:100787083 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1827 5 21495953 21499481 Apr5g1827 5 21495953 21499481 ECH