Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1816 ATGGCCATTAGAAAACCAAACAAGCTTTCCCAAACTACAGTCCTCAAACAAATCCTCAAGAGGTGTTCAAGCTTAGGAAAGAAAAACGGCTATGACGATGATGGTCTCCCTCTTGATGTCCCCAAAGGCCATTTTCCTGTTTACGTTGGAGAAAACAGAAGTAGATACATTGTTCCTATCTCGTTCCTCACCCACCCCCAGTTTCAATCCCTCCTTCGACAAGCTGAAGAAGAATTTGGCTTCGATCACGATATGGGTCTCACTATTCCTTGTGAAGAAGTTGTTTTCCGTTCTCTAACATCCATGCTCAGATGA 315 0.4349 MAIRKPNKLSQTTVLKQILKRCSSLGKKNGYDDDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPQFQSLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1816 104 Pfam Auxin responsive protein 32 103 IPR003676 GO:0009733
Apr5g1816 104 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 104 IPR003676 GO:0009733
Apr5g1816 104 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1816 Apr-Chr5 21429250 21429673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1816 5 103 Calmodulin-binding Proteins AT4G34750 39.394 2.62e-20 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1816 K14488 - gmx:100805634 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1816 5 21429250 21429673 Apr5g1816 5 21429250 21429673 ECH
Apr5g1816 5 21429250 21429673 Apr3g0336 3 6732842 6733300 ECH
Apr5g1816 5 21429250 21429673 Apr7g1090 7 17877635 17877949 ECH