LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g1811	ATGCCTGCCCTCGCTTGCTGCGTGGATGCTGCAGCACCTCCACACCACGCATTTTCTCCTGATATCTCTCTTTCGCCGCCGGTCAACTTCTCCGCCGACGACAACCATTGGTCGCCCTCTCTATCCGCCGCCCTATACAACGTCGATGGCTGGGGAGGCCCCTACTTCGCCGTGAACGCCGCCGGGAATATCTCCGTGCGGCCCCACGGTTCGGAGACCCTCTCCCACCAGGAGATTGATTTGCTGAAGGTGGTGAAGAGAGCCTCAGAACCCAAATCTGGCGGGGGTTTGGGCCTTAGGCTCCCTCTCATTGTTCGGTTCCCGGACGTTTTGAAGAACCGCGTCGAGTGCCTTCAATCGGCTTTCGATTACGCAATCGAATCCGAAGGGTACGAGTCTCATTACCAAGGGGTTTTCCCCGTGAAATGCAACCAGGACCGGTTCGTTGTCGAAGACATAGTGAAATTTGGTTCGCCCTTCAGGTTCGGTTTGGAGGCAGGGTCCAAACCGGAGCTTCTCCTGGCCATGACGTGTTTGTGCAAAGGCAACCCCGAAGCACTCGTGATTTGCAACGGCTTCAAGGACGCCGAGTACATTACTCTGGCCCTGGTTGCCACCAAGATGGCGCTGAACGCGGTGATCGTTCTTGAACAGGAGGAGGAACTCGACTTGATTATTGACCTCAGCAAAAAGCTCAGCATCAAACCCGTGATTGGCTTGCGAGCGAAACTTCGCACGAGACATTCGGGCCACTTCGGGTCCACTTCAGGGGAGAGAGGCAAGTTTGGCCTCACCACCGCTCAGGTTCTGAGGATTGTGAAGAAGCTAGAACACAAAAACATGCTGGATTGCCTTCAGTTGCTCCATTTTCACATCGGTTCCCAGATTCCTTCAACCGCGTTGCTGGCCGACGGTGTGGGAGAAGCCGCGCAGATCTATTGCGAACTGGTTCGTCTCGGGGCTAACATGCGAGTCCTCGACATTGGCGGTGGTCTGGGCATAGATTACGACGGTTCCAAATCGTGTGACTCCGATGCCTCTGTCGGGTACGGTCTTCAGGAATATGCTTCAGCAGTTGTTGGCGCGGTTCAGTGCGTCTGCGATAGAAGGTCGGTTAAGCACCCAGTTATCTGCAGCGAGAGTGGAAGGGCCATCGTGTCTCATCATTCGGTGTTAGTTTTCGAAGCTGTTGGCGCGAGCGCTGCCCCGTCATTGTCCTCCCTTGAACTGGAATATTTGGTGGAGGAGCTCTCGGAGGAGGCTCGCGCCGATTACCAAAATCTCTCCGATGCTGCCCTGCGAGGGGACTATGATACGTGTTTGCAGTGGGCGGAGGAAATGAAACAGCGATGCGTGGAGAAGTTCAAGGAAGGGTCAGTGTGCATGGAACAGCTGGCAGGCGTTGAGGGGTTGTGTGATGTGGTGAGGAAGGCGGTGGGGGCGGGGGAACATGTTCGGAAATATCAGGTGAACCTGTCGGTGTTCACGTCCATTCCTGACGCGTGGAGCATTGAACAGGTGTATCCCATTGTCCCCATTCATCGCCTGGAGGAGAAGCCATCGGTGAGGGGGATTCTCTCTGACTTGACATGTGACAGTGATGGGAAGATTGACAAGTTCATAAAGGGCGAGTCGAGCCTGCTGCTGCACGAAATGGAAGGTGGAAACCGAGGGTACTATCTCGGAATGTTTTTGGGTGGGGCTTACGAGGAGGCGCTTGGTGGAGTCCACAACTTGTTTGGTGGCCCCAGCGTTGTTCGCGTCTCGCAGAGCGATGGCCCCCACGCGTTCTCCGTCACTCGGGCAGTGTCTGGGCCCTCTTGTGGAGACGTCCTTCGAGTGATGCAGCACCAGCCCGACCTCATGTTCCAGACGCTCAAGCGCCGTGCCCAAGAGTGTGTTGCTGACGGCGACGTCTTCAGTGCTGCGGCCATCGCCTCTGGGCTCTCTCGCTCGTTCAACACCATGCCTTATCTGGTGCAGTCGTCGTTGTCATTGTCGAGTTGCTGCTTGTGTGCCGGAGATGAAGGCATAGTCGCAGATTCTGCTGGAGAAGATGAGCGAGAGCAGTGGTCTTATTGCTATGTTTGA	2091	0.5581	MPALACCVDAAAPPHHAFSPDISLSPPVNFSADDNHWSPSLSAALYNVDGWGGPYFAVNAAGNISVRPHGSETLSHQEIDLLKVVKRASEPKSGGGLGLRLPLIVRFPDVLKNRVECLQSAFDYAIESEGYESHYQGVFPVKCNQDRFVVEDIVKFGSPFRFGLEAGSKPELLLAMTCLCKGNPEALVICNGFKDAEYITLALVATKMALNAVIVLEQEEELDLIIDLSKKLSIKPVIGLRAKLRTRHSGHFGSTSGERGKFGLTTAQVLRIVKKLEHKNMLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGANMRVLDIGGGLGIDYDGSKSCDSDASVGYGLQEYASAVVGAVQCVCDRRSVKHPVICSESGRAIVSHHSVLVFEAVGASAAPSLSSLELEYLVEELSEEARADYQNLSDAALRGDYDTCLQWAEEMKQRCVEKFKEGSVCMEQLAGVEGLCDVVRKAVGAGEHVRKYQVNLSVFTSIPDAWSIEQVYPIVPIHRLEEKPSVRGILSDLTCDSDGKIDKFIKGESSLLLHEMEGGNRGYYLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHAFSVTRAVSGPSCGDVLRVMQHQPDLMFQTLKRRAQECVADGDVFSAAAIASGLSRSFNTMPYLVQSSLSLSSCCLCAGDEGIVADSAGEDEREQWSYCYV*	697

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Apr5g1811	696	SUPERFAMILY	PLP-binding barrel	107	389	IPR029066	-
Apr5g1811	696	PIRSF	ARGDC	25	661	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Apr5g1811	696	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	139	157	IPR000183	GO:0003824
Apr5g1811	696	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	163	175	IPR000183	GO:0003824
Apr5g1811	696	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	282	295	IPR000183	GO:0003824
Apr5g1811	696	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	377	396	IPR000183	GO:0003824
Apr5g1811	696	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	567	580	IPR000183	GO:0003824
Apr5g1811	696	PRINTS	Arginine decarboxylase signature	107	122	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Apr5g1811	696	PRINTS	Arginine decarboxylase signature	131	145	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Apr5g1811	696	PRINTS	Arginine decarboxylase signature	189	204	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Apr5g1811	696	PRINTS	Arginine decarboxylase signature	215	236	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Apr5g1811	696	PRINTS	Arginine decarboxylase signature	239	261	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Apr5g1811	696	PRINTS	Arginine decarboxylase signature	367	384	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Apr5g1811	696	PRINTS	Arginine decarboxylase signature	491	512	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Apr5g1811	696	PRINTS	Arginine decarboxylase signature	516	541	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Apr5g1811	696	PRINTS	Arginine decarboxylase signature	567	588	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Apr5g1811	696	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	134	387	IPR022644	GO:0003824
Apr5g1811	696	TIGRFAM	speA: arginine decarboxylase	37	659	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Apr5g1811	696	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 signature 2.	320	333	IPR022657	-
Apr5g1811	696	Gene3D	-	406	484	-	-
Apr5g1811	696	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	139	157	IPR022653	-
Apr5g1811	696	PANTHER	ARGININE DECARBOXYLASE	1	674	-	-
Apr5g1811	696	Gene3D	Alanine racemase	108	389	IPR029066	-
Apr5g1811	696	SUPERFAMILY	Alanine racemase C-terminal domain-like	481	591	IPR009006	GO:0003824
Apr5g1811	696	PANTHER	ARGININE DECARBOXYLASE	1	674	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Apr5g1811	696	CDD	PLPDE_III_ADC	104	588	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Apr5g1811	696	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	46	590	IPR009006	GO:0003824

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g1811	Apr-Chr5	21389873	21393320	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g1811	K01583		-	gmx:100793552	1064.68

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr5g1811	5	21389873	21393320	Apr5g1811	5	21389873	21393320	ECH