Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1805 ATGGCAAGGCCCAGTGTGCTTCTTGTTGTGTTGCTAATTGCAATGGCCTATTCAGCAAGTGCGACTGGTCACGATTATGTGGAGGCATTGTCGAAGGCCATTCTGTTCTTCGAGGGCCAGCGATCGGGCTTCTTGCCTCAGGACCAGAGGCTCAACTGGCGGGCCCATTCCGGTTTGAGCGATGGATGGACCTACAACGTTGACCTCACCGGCGGTTACTACGACGCCGGCGATAACGTCAAATTTGGGTTTCCGATGGCATTCACGACGACAATGTTGGCGTGGAGTGTGATTGAATTCGGTGACATGATGCCTCCCAATGAACTCAGAAACGCCTTCGTTGCTATCCGTTGGGCCACTGATTATTTGCTCAAAACTGTTTCTCAGCCCAACCGCATTTTCGTTCAGGTGGGTGATCCAATGTCTGACCATAACTGCTGGGAAAGACCGGAGGACATGGACACGAGCAGGAGTGTGTATGCTGTGGATGCACCAAACCCAGCTTCAGAAGTTGCTGGTGAAACAGCGGCGGCACTAGCTGCTTCATCCATGGCATTCCGTTCATCGGATCCCGGTTATTCAGAGACTTTGCTGCGAAATGCTGTTAAGGCCTTTCAATTTGCAGATAACTACAGGGGTGCCTACAGTGACAATGCCGATGTAAGGGTTGGTGTCTGCCCATATTATTGTGACTTTGATGGTTATCAGGACGAATTGTTATGGGGAGCCGCATGGCTAAGGAGGGCCACTGAGGAAGAAAATTTCCTAAATTACATTCAAAGCAATGGCAAAACGTTTGGTGCTGAGGAGAATATAAATGAGTTCGGTTGGGACAACAAGCATGCTGGCCTCAACGTTCTCGTATCCAAGGAAGTTGTAGAAGGAAATGTATACTCTCTTGAATCCTACAAGACTTCGGCAGAGAGCTTTTTGTGCACACTCATACCCGAAACATCAAGTTCACACATAGAGTACACTCCTGGTGGACTCATATACAGGCCTGGGGGTAGCAACTTGCAGCATGCAACTTCAATCGCTTTCCTTGAATTGGTGTACGCTAATTACCTTTCTCGTACGTCACAAACTATCAATTGTGGGAACGTCTATGTTAGTGCACAAACACTTCGGCAGCATGCTAAGAGACAAGTTGATTACATTTTGGGAGATAACCCAATGGGGTTGTCCTACATGGTTGGCTACAGCAACAAGTATCCTCAGCGTATTCATCATCGTGGCTCCTCTTTACCCTCCATTAAGGATCATCCTCAGTTCATTGCATGCAAAGAAGGTTCAATCTACTTTAACTCAACCAATCCTAATCCTAATGTTCTCGTAGGAGCCATTGTGGGAGGACCCGGAGAAGATGATGTGTATGTGGATGATAGGGCTGATTTTAGAAAGTCCGAGCCAACTACCTATATTAATGCACCATTTGTTGGAATTTTAGCATATTTTGCTGCCAATCCCAATCCTTGA 1476 0.4722 MARPSVLLVVLLIAMAYSASATGHDYVEALSKAILFFEGQRSGFLPQDQRLNWRAHSGLSDGWTYNVDLTGGYYDAGDNVKFGFPMAFTTTMLAWSVIEFGDMMPPNELRNAFVAIRWATDYLLKTVSQPNRIFVQVGDPMSDHNCWERPEDMDTSRSVYAVDAPNPASEVAGETAAALAASSMAFRSSDPGYSETLLRNAVKAFQFADNYRGAYSDNADVRVGVCPYYCDFDGYQDELLWGAAWLRRATEEENFLNYIQSNGKTFGAEENINEFGWDNKHAGLNVLVSKEVVEGNVYSLESYKTSAESFLCTLIPETSSSHIEYTPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTSQTINCGNVYVSAQTLRQHAKRQVDYILGDNPMGLSYMVGYSNKYPQRIHHRGSSLPSIKDHPQFIACKEGSIYFNSTNPNPNVLVGAIVGGPGEDDVYVDDRADFRKSEPTTYINAPFVGILAYFAANPNP* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1805 491 PANTHER ENDO-1,4-BETA-GLUCANASE 6 490 - -
Apr5g1805 491 Pfam Glycosyl hydrolase family 9 26 482 IPR001701 GO:0004553|GO:0005975
Apr5g1805 491 Gene3D - 23 488 IPR012341 GO:0005975
Apr5g1805 491 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 385 411 IPR018221 -
Apr5g1805 491 PANTHER ENDOGLUCANASE 24 6 490 - -
Apr5g1805 491 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 458 476 IPR033126 -
Apr5g1805 491 SUPERFAMILY Six-hairpin glycosidases 8 487 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1805 Apr-Chr5 21356971 21360447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1805 1 488 Glycoside Hydrolase AT1G70710 59.878 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1805 K01179 - gmx:100799911 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1805 5 21356971 21360447 Apr5g1805 5 21356971 21360447 ECH