Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1800 ATGGAAGCTATCAGAAAGCAAGCCTCCAAGCTTCGAGAACAGGTCGCTCGCCAACATCAGCTTCAACAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCAGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTTACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTGTCGGAAGATAGCAGGAAATATGGAGCGGATAATACGTGTACCAGTGGTAATACGTTATCAAGAGCTGCGCTAAATTATGCACGGGCCCGTGCACAAATGGAAAAGGAGCGCGGTAACTTACTAAAAGCTCTTGGCACACAGGTTGCTGAACCCTTAAGAGCAATGGTGATGGGAGCTCCATTAGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGACAGGAAGCTGAAGCTCAGGCAATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAACTGGAAGCAGCTGAAGCAAAGCTGCAAGACCTGAAGACAAACATGGGCATATTGGGAAAGGAAGCAGCTGCAGCAATGGCTGCTGTTGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCAATGGTTGAAGCAGAGCGTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAGCGAATTGAAGCCCCTCCTACACCTAGTGTGGATAACAGCATGCCGCCACCCCCATCATATGAAGAAGTAAATGGTGTATATGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTTTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCAGTTGGGGATTATATTGTTGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGAAAAGCAGGTTGGTTTCCATTCGGTTACATTGAAAGAAGGGAGCGAGTCCTTGCGAGCAAGGTGGCTGAAGTGTTTTGA 1047 0.4546 MEAIRKQASKLREQVARQHQLQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGADNTCTSGNTLSRAALNYARARAQMEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNAENAMKLEAAEAKLQDLKTNMGILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDQLEGEMISERQRIEAPPTPSVDNSMPPPPSYEEVNGVYASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1800 348 SUPERFAMILY BAR/IMD domain-like 24 235 IPR027267 -
Apr5g1800 348 Coils Coil 1 21 - -
Apr5g1800 348 PANTHER SH3 DOMAIN-CONTAINING 20 348 - -
Apr5g1800 348 Coils Coil 126 153 - -
Apr5g1800 348 SMART SH3_2 282 337 IPR001452 GO:0005515
Apr5g1800 348 Coils Coil 163 190 - -
Apr5g1800 348 Gene3D SH3 Domains 269 346 - -
Apr5g1800 348 ProSiteProfiles Src homology 3 (SH3) domain profile. 279 338 IPR001452 GO:0005515
Apr5g1800 348 SUPERFAMILY SH3-domain 242 336 IPR036028 GO:0005515
Apr5g1800 348 Pfam Variant SH3 domain 286 334 IPR001452 GO:0005515
Apr5g1800 348 Coils Coil 197 217 - -
Apr5g1800 348 Gene3D Arfaptin homology (AH) domain/BAR domain 22 244 IPR027267 -
Apr5g1800 348 PANTHER PROTEIN, PUTATIVE-RELATED 20 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1800 Apr-Chr5 21302322 21310866 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1800 - - gmx:100783004 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1800 5 21302322 21310866 Apr5g1800 5 21302322 21310866 ECH