LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g1668	ATGCAACAAGGAGATTACAGTTCCGCTCCATATTACCAATTCCCTCATCTTCAAAACCCTAACCCTAACCCCAACCCTGTGCCTTCCGATCCTCTCCCCAACAATCCCTACGCTTCTGCACCTCCCTTCACTCCCAATTACGTTCCTTCCGATTACACCCCTTACCCCTCATCCTATCCCCCTTCCTACTCGCAGAACCCCGATCCTACTCCACCCACCGCTCCTTCCTACCCTCCGTCTTCCTCCAACCCTAATTTGCCTCCCTTCAATTCCAACTTCGAATCCAACCCTTCTTACCAACCACCACCCTCTCAACCCTATTTCCCACCCTATGATCAGCAGCAAACGCCTCCCAATTACGCCCCGCCCCCTTCATCAATTCCTTCCACCCCCAATTCCACTGCTTCGTACTCTTCCTTATATAATTCCGCTCCTTACGGCCACACAGCTGGATCCTCCGTTCCTCCGGTTCCAGCATACGAAGCCTCATACGATAATCCGGTGAAGCCCGATCATGGGAGTGGCTTTTTCGATGATAGATATGGTGGTTTTAATCGGAGCCGTTCCGATTTGGGATCCGATTATTATGGGAAGCGTCACGATGGCAGCGTTTCGAGGTACGAAGGTGGCGGTGAAGAAGGTTATGGAGATGGTGTGTATGCTTATGAAGGGGGCAAAGTGGAACCATATGGGGCGCGAGGCACTGCGCCGAAATCGTCGACGTGGTCAGCGTTTGATGATTATGGGAGGTCAATCAGTTTCCCCTCTCAGAAGGAAACTTCTGTTGGGGGGAAGATTGTGAAGGCAGTGCCAAAGGCTGATACCCAAGAAGACGTGAAAGGTGGCGTGCAGAAATTTCGGGTGAAGCTGTTGGCAGAGAGTGGTGGTCAGAGCACTATGGATGTTCTCTGTCAGATTGGTTTGGATGGAATTCGTATGTTGGATCCATATACCAGTCGGACTTTGAGAATATATCCTCTTGAGAATGTAACAAGATGTGATAGAATGGATTCATCTACCTTTGCATTTTGGTCAAAGAGCCCGGTGGACATTGAGCCAAGACGAATCAGATTGCAATCCAATAGCTACACTACTAACACACTTTTGGATACTGTGACTGCTGCAACCATACAGTTCAAGGAAATGGGTGGAAGCAAGAGGCCTGTTGAATCAGTGAAAATAAATGAACAGCCTGCAGAAAGAAAGAAAGGGTTTGGCGATTGGATGAATCTGATTAAACCTGCCAATGAAGAGAAGGATCATTGGGTCCCAGATGAAGCTGTCTCAAAATGTACAGCATGTGGCACTGACTTTGGGGCTTTTGTTCGTAAGCATCACTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACGCATGGTAGAATTGCTCTAACTTCTGATGAGAATGCTCAACCAGTTCGAGTTTGTGACCGGTGCATGGCAGAAGTGACTCAGCGGCTTAACAGTGCTAAAGAGTCATCGAGTAAACCTGCATTGCAGAGTCATGAGGATCTTGCCAGGAAACTTCAGGAGGAGCTGGAGAGAAATCGAAAGTTATCAGTTTACAAGCCTGAGGGATCTGGAAGACGGATGAAGGAAGTTGCATGCCCTATTTGCACAGTCCACCTGCAGGTTCAGGTGCCTAGCTCAGGTTCAGAGACCATTGAGTGTGGAGTTTGCCAGCACCCATTTCTCGTGAGTGCTCATTGA	1713	0.4851	MQQGDYSSAPYYQFPHLQNPNPNPNPVPSDPLPNNPYASAPPFTPNYVPSDYTPYPSSYPPSYSQNPDPTPPTAPSYPPSSSNPNLPPFNSNFESNPSYQPPPSQPYFPPYDQQQTPPNYAPPPSSIPSTPNSTASYSSLYNSAPYGHTAGSSVPPVPAYEASYDNPVKPDHGSGFFDDRYGGFNRSRSDLGSDYYGKRHDGSVSRYEGGGEEGYGDGVYAYEGGKVEPYGARGTAPKSSTWSAFDDYGRSISFPSQKETSVGGKIVKAVPKADTQEDVKGGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPYTSRTLRIYPLENVTRCDRMDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQFKEMGGSKRPVESVKINEQPAERKKGFGDWMNLIKPANEEKDHWVPDEAVSKCTACGTDFGAFVRKHHCRNCGDIFCDKCTHGRIALTSDENAQPVRVCDRCMAEVTQRLNSAKESSSKPALQSHEDLARKLQEELERNRKLSVYKPEGSGRRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSAH*	571

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g1668	570	MobiDBLite	consensus disorder prediction	99	129	-	-
	Apr5g1668	570	Coils	Coil	500	520	-	-
	Apr5g1668	570	MobiDBLite	consensus disorder prediction	17	85	-	-
	Apr5g1668	570	MobiDBLite	consensus disorder prediction	1	16	-	-
	Apr5g1668	570	ProSiteProfiles	Zinc finger FYVE/FYVE-related type profile.	425	485	IPR017455	-
	Apr5g1668	570	MobiDBLite	consensus disorder prediction	1	151	-	-
	Apr5g1668	570	PANTHER	PROTEIN FREE1	1	570	-	-
	Apr5g1668	570	SUPERFAMILY	FYVE/PHD zinc finger	420	494	IPR011011	-
	Apr5g1668	570	Pfam	FYVE zinc finger	421	485	IPR000306	GO:0046872
	Apr5g1668	570	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	412	490	IPR013083	-
	Apr5g1668	570	MobiDBLite	consensus disorder prediction	130	149	-	-
	Apr5g1668	570	PANTHER	PROTEIN FREE1	1	570	IPR045893	GO:0036258\|GO:0043130
	Apr5g1668	570	SMART	fyve_4	417	486	IPR000306	GO:0046872
	Apr5g1668	570	PRINTS	Proline rich extensin signature	13	25	-	-
	Apr5g1668	570	PRINTS	Proline rich extensin signature	29	50	-	-
	Apr5g1668	570	PRINTS	Proline rich extensin signature	54	70	-	-
	Apr5g1668	570	PRINTS	Proline rich extensin signature	71	88	-	-
	Apr5g1668	570	PRINTS	Proline rich extensin signature	97	122	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr5g1668	403	486	EF-hand Containing Proteins	AT3G14270	33.673	9.26e-13	69.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g1668	-		-	gmx:100794840	803.897

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr5g1668	5	20266992	20272802	Apr5g1668	5	20266992	20272802	ECH