Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1661 ATGGATCAGCTCACACTTTCATTTCGATTCCTACTAACACTTCACCTATTAGCATCAGGGGTGGCATCAACAACGTTCACATTAGTTAACAAATGCGACTACACAGTGTGGCCAGGCATTCTCTCCAACGCAGGAGTTGCGTCACTTTCAACCACCGGTTTCGTTCTGCAAAGCGGTGAATCCAAAACCATAACCGCACCCACTTCTTGGGGGGGCCGCTTCTGGGGCCGCACCCTCTGCACCCAAAACGTCTCCACCGGAAGATTCTCCTGTGTCACTGGTGATTGTGCCTCCGGCAAGCTCGAATGCGCCGGCAATGGAGCCACGCCGCCGGCCACCTTAGCCGAGTTCACTCTCAACGGCGCGGGAGGACTCGATTTCTTTGACGTCAGCTTGGTCGACGGCTACAACGTGCCGATGCTGGTGGTTCCCCAAGGTGGCTCCGGCGACAACTGCACCGCCACGGGTTGCGTTGGGGATCTCAACGGCCCGTGTCCTTCGGAGCTCAGGGTTACGAGCGTGGATGGGAAACAGAGCGTGGCGTGCAAGAGCGCGTGCGAGGCTTTTGGGTCGCCTCAGTATTGTTGCAGCGGTGCGTATGGCTCACCCAACACTTGCAAGCCTTCGGCTTACTCGCTCATGTTCAAGAACGCTTGCCCACGCGCCTATAGCTACGCGTACGATGATAAGACGAGCACGTTTACGTGCGGTTCTGATGCCGCTTATGCCATCACTTTTTGTCCTTCAGCTAACAGTAATCCCAGTCAGAAATCGTGGCAGGGGCAAAATCCAAAACCAGATGGTAGTGGGAGTGGTTCTTCTTCTGCCTCAGCATCGCCGCAGCTTAACAATGGCACAATGGTGTATGTAGGCGCCATGGATGAAAGTGGGATACCATGGTCCGCGGGTACGCATGTGTGGGAATCCAATGCCATTGCCAGCATTGTCAGCATTACCGTGGCTATTTGGCTGTTGTGCCAGCTCTACTAA 990 0.5505 MDQLTLSFRFLLTLHLLASGVASTTFTLVNKCDYTVWPGILSNAGVASLSTTGFVLQSGESKTITAPTSWGGRFWGRTLCTQNVSTGRFSCVTGDCASGKLECAGNGATPPATLAEFTLNGAGGLDFFDVSLVDGYNVPMLVVPQGGSGDNCTATGCVGDLNGPCPSELRVTSVDGKQSVACKSACEAFGSPQYCCSGAYGSPNTCKPSAYSLMFKNACPRAYSYAYDDKTSTFTCGSDAAYAITFCPSANSNPSQKSWQGQNPKPDGSGSGSSSASASPQLNNGTMVYVGAMDESGIPWSAGTHVWESNAIASIVSITVAIWLLCQLY* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1661 329 CDD TLP-PA 25 247 - -
Apr5g1661 329 SUPERFAMILY Osmotin, thaumatin-like protein 24 249 IPR037176 -
Apr5g1661 329 Pfam Thaumatin family 30 248 IPR001938 -
Apr5g1661 329 PANTHER BNAA02G17480D PROTEIN 4 274 - -
Apr5g1661 329 Gene3D Thaumatin 24 248 IPR037176 -
Apr5g1661 329 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Apr5g1661 329 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Apr5g1661 329 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Apr5g1661 329 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Apr5g1661 329 PANTHER OS03G0233200 PROTEIN 4 274 IPR001938 -
Apr5g1661 329 MobiDBLite consensus disorder prediction 252 280 - -
Apr5g1661 329 ProSiteProfiles Thaumatin family profile. 23 248 IPR001938 -
Apr5g1661 329 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Apr5g1661 329 SMART tha2 26 248 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1661 Apr-Chr5 20218485 20221790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1661 1 260 Receptor kinase-like Gene Family AT5G38280 53.435 1.08e-95 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1661 - - gmx:100780102 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1661 5 20218485 20221790 Apr5g1661 5 20218485 20221790 ECH