Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1656 ATGAAGGGAAGCAAGAGGGCGATCCACACCATGACGACATGGGTTCGCCGACAACCACCCAAAATGAAGGCCTTTCTGGCGGTGCTATCGTGCCTCGCAGCCTTACTCTTCCTCAGAATGGTCGTTCACGACCACGACACCCTCTTCGTCGTAGCCGAGCTTGTCCATGCTTTAGGAATTTCCGTCCTCATTTACAAACTCACCAAGGAAAAAACATGTGCCGGACTTTCGCTTAAATCGCAGGAGATGACAGCTTTGTTTCTAGCTGTTAGACTATACTGCAGTTTTGTGATGGAATATGATATACACACCATACTGGATATGGCTACCTTGGTGACGACCCTCTGGGTCATTTATATGATACGCCTCAAACTCAAAGCTAGTTATATGGATGATAAGGACAACCTTGCAATTTACTATGTGGTGATACCTTGCGCAGTGCTGTCCTTGTTTATTCACCCAACAACCCGGCATCATACAATTAATAGGATTCTCTGGGCATTTTGTGTTTATCTTGAAGCTGTGTCTGTTCTCCCTCAGCTGCGGGTCATGCAGAACACAAAGATTGTTGAACCATTCACAGCACACTATGTTTTTGCCCTTGGAGTTGCAAGGTTCTTGAGTTGTGCACATTGGGTCCTTCAGGTGTTAGATACTCGTGGACGTCTACTAACTGCTTTGGGTTACGGATTGTGGCCTTCAATGGTTCTTCTATCAGAAATTGTCCAAACTTTCATCCTGGCAGATTTTTGCTACTACTACGTCAAGAGTCTTGTTGGGGGACAGCTTGTTCTTCGACTTCCTTCAGGAGTGGTGTAA 819 0.4579 MKGSKRAIHTMTTWVRRQPPKMKAFLAVLSCLAALLFLRMVVHDHDTLFVVAELVHALGISVLIYKLTKEKTCAGLSLKSQEMTALFLAVRLYCSFVMEYDIHTILDMATLVTTLWVIYMIRLKLKASYMDDKDNLAIYYVVIPCAVLSLFIHPTTRHHTINRILWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLLTALGYGLWPSMVLLSEIVQTFILADFCYYYVKSLVGGQLVLRLPSGVV* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1656 272 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 1 271 IPR000133 GO:0006621|GO:0016021|GO:0046923
Apr5g1656 272 PRINTS ER lumen protein retaining receptor signature 48 67 IPR000133 GO:0006621|GO:0016021|GO:0046923
Apr5g1656 272 PRINTS ER lumen protein retaining receptor signature 75 95 IPR000133 GO:0006621|GO:0016021|GO:0046923
Apr5g1656 272 PRINTS ER lumen protein retaining receptor signature 166 186 IPR000133 GO:0006621|GO:0016021|GO:0046923
Apr5g1656 272 PRINTS ER lumen protein retaining receptor signature 188 202 IPR000133 GO:0006621|GO:0016021|GO:0046923
Apr5g1656 272 PRINTS ER lumen protein retaining receptor signature 202 220 IPR000133 GO:0006621|GO:0016021|GO:0046923
Apr5g1656 272 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR-LIKE PROTEIN 1 271 - -
Apr5g1656 272 Pfam ER lumen protein retaining receptor 72 214 IPR000133 GO:0006621|GO:0016021|GO:0046923
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1656 Apr-Chr5 20168713 20171576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1656 4 272 Miscellaneous Gene Families AT4G38790 80.669 7.89e-166 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1656 - K10949 gmx:100787747 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1656 5 20168713 20171576 Apr5g1656 5 20168713 20171576 ECH