Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1650 ATGGGAGAAAAATCGAGGTCCAAAGGGTGCTGCGGTTGGTTTCTGGCGCTTCTGGTTCTGGCTCTCGTCGTCGGTGCCGTTGTTTATACCATCAAGAAGAAAATTGGTCACTCCGATAAGCCAGCTCCGGTTCCGGGTCCCCCTGGCGCCATTGACCAGAAATACGCATCTGCTCTCAAAACTGCATTGCAATTCTTCGATATTCAAAAATCTGGTAAGTTGGTTGACAATAAAATAACTTGGAGGGGGAATTCGGCTCTTAAGGATGGAAGCCAAGCGAGATTGGATCTATCGAAAGGAATGTATGATGCTGGGGATCATATGAAGTTTGGTTTTCCGATGGCTTTTACGGCCACGGTGTTATCATGGGCCATTCTGGAATATGGAGATCAAATGGATGCTGTTGGCCAGTTAGAACCAGCACAAGATTCGCTCAAGTGGATCACTGATTATCTCATCACTGCTCACCCTTCTGATAATGTTCTTTATATTCAGGTGGGTGATCCCGTTGCAGATCACAAATGTTGGGAAAGACCTGAAGCCATGGCTGAGGCACGACCACTCACACAAGTGAACATATCTTGTCCTGGATCAGATGTCGCAGCTGAAACAGCAGCAGCCATGGCCTCAGCATCTTTGGTCTTTAAAAAGACTGATTCTACATATTCAGGCACTCTACTCAAGCATTCAAAACAGTTGTTTACTTTTGCTGACAAGCATAGAGGATCTTATAGTGAGAATATACCTGAAGTCCAGACATATTATAACTCAACTGGATATGGTGACGAGCTTTTATGGGCAGCTAGCTGGCTCTATCATGCTACAGGTGATGATTCTTACCTTCAGTATGTGACTGGCCAAAATGGAGAAGACTATGCTCAATGGGGAAGCCCAACCTGGTTCAGTTGGGACAATAAGCTTGCTGGAGCTCAGGTTTTGTTATCCAGATTAAGCTTTTTTAAGGCAAAGGACATTTCAAATTCTTATGGCTCTGGGCTCCATAATTACAGGAAGACAGCTGAGGCTGTAATGTGTGGCCTTCTTCCAGATTCTCCAACAGCCACAAAAAGCAGAACCGATAGTGGTCTTATATGGGTGAGCGAGTGGAACTCTCTGCAGCATCCTGTTGCTTCTGCATTCTTAGCTGCTGTTTACAGTGACTATATGCTAACATCGCAGACACCAAAACTAAAATGTGATTCAAATTCCTTTACCCCATCAGATCTTCGAGACTTTGCCAAATCTCAGGCCGATTACGTATTGGGCAAGAATCCTATGCATATGAGTTTTCTAGTGGGTTATGGAGATAAATTCCCGCAATTCGTGCATCATAGAGGGGCTTCAATTCCTAGTGATGCAAAAACTGGCTGCAAGGATGGCTTCCAGTGGCTTGACTCATCTGATCCTAATCCCAATGTAGCAACTGGAGCACTTGTTGGTGGACCCTTCTTAAATGAGACTTTCATTGATTCGAGGAACAATTCCATGCAAACAGAACCAAGCACTTACAACAGTGCTGTCATAGTCGGTCTCTTATCAAGTTTAGTCACCACATCTTCTGCTGTTCAATCCTTTACCTAA 1581 0.4447 MGEKSRSKGCCGWFLALLVLALVVGAVVYTIKKKIGHSDKPAPVPGPPGAIDQKYASALKTALQFFDIQKSGKLVDNKITWRGNSALKDGSQARLDLSKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDAVGQLEPAQDSLKWITDYLITAHPSDNVLYIQVGDPVADHKCWERPEAMAEARPLTQVNISCPGSDVAAETAAAMASASLVFKKTDSTYSGTLLKHSKQLFTFADKHRGSYSENIPEVQTYYNSTGYGDELLWAASWLYHATGDDSYLQYVTGQNGEDYAQWGSPTWFSWDNKLAGAQVLLSRLSFFKAKDISNSYGSGLHNYRKTAEAVMCGLLPDSPTATKSRTDSGLIWVSEWNSLQHPVASAFLAAVYSDYMLTSQTPKLKCDSNSFTPSDLRDFAKSQADYVLGKNPMHMSFLVGYGDKFPQFVHHRGASIPSDAKTGCKDGFQWLDSSDPNPNVATGALVGGPFLNETFIDSRNNSMQTEPSTYNSAVIVGLLSSLVTTSSAVQSFT* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1650 526 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 419 445 IPR018221 -
Apr5g1650 526 Pfam Glycosyl hydrolase family 9 55 512 IPR001701 GO:0004553|GO:0005975
Apr5g1650 526 SUPERFAMILY Six-hairpin glycosidases 53 518 IPR008928 GO:0005975
Apr5g1650 526 PANTHER ENDO-1,4-BETA-GLUCANASE 7 526 - -
Apr5g1650 526 PANTHER ENDOGLUCANASE 2 7 526 - -
Apr5g1650 526 Gene3D - 52 519 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1650 Apr-Chr5 20132170 20136480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1650 1 525 Glycoside Hydrolase AT1G75680 73.106 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1650 - - gmx:100820195 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1650 5 20132170 20136480 Apr5g1650 5 20132170 20136480 ECH