Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1640 ATGTCTGCATCCGAAGCGGAGAAGAAGGTCGAGGAAGAGGAGGTTGTGAAAGGGGGAGAGCTCTTGTTCTGCGGTGCCACGTGTTGGGATATCATTGGTCGTCGCAGAGGTTCCGCCGACTCTAACTTGGTCTCTCCCTCGCGCCTCCGTCCTCTCGCCGGCGTTGATATTCGCTACGTTGCCTCTGGTTGCGCGTCTTGCCATTGTGTGGCATTGGACGTTGAAGGGCGTTGCTATACATGGGGCCGTAATGAGAAGGGGCAACTGGGTCATGGAGATACCATTCAGCGCGATAGACCAACTGTTGTGTCTGAACTTTCCAAATACAAAGTTGTCAAAGCTGGAGCAGGTAGGAGCCATACGGTGGTTGTTACCGAGGATGGGAATTCACTAGCCTTTGGATGGAACAAACATGGACAGTTAGGTTCGGGTTCTGTGAAAAATGAAATTGAGTTATCTCCTGTTCGCTGTCTTGTGGCTGAAGTAAAATATACTACTTGTGGTGGTGATTTCACTGTTTGGTTATCTTCTGTTGAAGGAGCTTCTATACTGACTGCAGGGCTTCCACAGTATGGGCAGCTTGGCCATGGAACAGATAACGAGTATAATTCCAAAGACAGCTCTGTGAGGTTGGTTTATGAAGCCCAGCCACGCCCACGAGCAATTGCAGCTCTTGCTGGGGAAACAATTGTCAAAGTGGCATGTGGAACAAATCATACAGTGGCGGTGGATAAGAATGGCTTTGTCTACACGTGGGGTTTTGGTGGTTATGGAAGGTTAGGGCATAGGGAGCAGAAGGATGAGTGGGTCCCACGTCGTGTTGATGTTTTTCAGAATAGAAATATTTTGCCCCCTGATGCAGTTATTTCAGCTGGTTCTGTGAATTCTGCATGCACTGCAGGTGGAGGGCAGTTGTATATGTGGGGCAAAATCAAGAACACTGGCGATGACTGGATGTATCCTAAGCCTCTAATGGATTTAAGTGGTTGGAATATACGATGCATGGATTCAGGCAACATGCACCATTTTGTTGGGGCTGATTCCTCTTGCATAAGTTGGGGACATGCTCAGCATGGAGAGTTGGGATATGGACCTACTGGACAGAAGTCTTCAGCTGTACCCAAGAAGGTGGATATACTTGAGGGCATGCATGTCTTAAGTGTTGCTTGTGGTATGGGTCATTCCATGGTGGTGGTTGATAGAACAAATGTTGCTGATCGACTTGACCAGCTTGATATATATGATGGCAAAACTTTTGGTGAAGGCAATGAGGTCATAAACACAATTCCAGTGCCTAAGCAGGCTGCAAAAAAAGGTGTGAAAGGAGCTGACAATTCGAAGAAGCGGAAAAAATCAAAAGACTCATCCGAATCAGATGAGGAAGAGGATGTTGAAGATAGTGACAATAGTGAGGATCAAGTTAATGGTGAGGGTGAGGTGAAAAGGTCACGTAGTTCTGGTAAAGGCCGAGGTAAGTCATCAAAGAAGTCAGGTGCGGTGGAAAAAAGCTCTGGCCGTGGGCGGGGTCGAACTCCAGCAAATAAGAACAGTTCTAAATCAGCTCAAGTGAAATCCAGTAAGAGAGGAAGACCCCGTAAGTCATGA 1605 0.4735 MSASEAEKKVEEEEVVKGGELLFCGATCWDIIGRRRGSADSNLVSPSRLRPLAGVDIRYVASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKYKVVKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSVKNEIELSPVRCLVAEVKYTTCGGDFTVWLSSVEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEAQPRPRAIAALAGETIVKVACGTNHTVAVDKNGFVYTWGFGGYGRLGHREQKDEWVPRRVDVFQNRNILPPDAVISAGSVNSACTAGGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADSSCISWGHAQHGELGYGPTGQKSSAVPKKVDILEGMHVLSVACGMGHSMVVVDRTNVADRLDQLDIYDGKTFGEGNEVINTIPVPKQAAKKGVKGADNSKKRKKSKDSSESDEEEDVEDSDNSEDQVNGEGEVKRSRSSGKGRGKSSKKSGAVEKSSGRGRGRTPANKNSSKSAQVKSSKRGRPRKS* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1640 534 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 348 401 IPR000408 -
Apr5g1640 534 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 128 178 IPR000408 -
Apr5g1640 534 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 388 398 IPR000408 -
Apr5g1640 534 PRINTS Chromosome condensation regulator RCC1 signature 77 93 IPR000408 -
Apr5g1640 534 PRINTS Chromosome condensation regulator RCC1 signature 111 124 IPR000408 -
Apr5g1640 534 PRINTS Chromosome condensation regulator RCC1 signature 130 146 IPR000408 -
Apr5g1640 534 PRINTS Chromosome condensation regulator RCC1 signature 233 249 IPR000408 -
Apr5g1640 534 PRINTS Chromosome condensation regulator RCC1 signature 249 263 IPR000408 -
Apr5g1640 534 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 233 243 IPR000408 -
Apr5g1640 534 Gene3D - 210 405 IPR009091 -
Apr5g1640 534 Gene3D - 13 209 IPR009091 -
Apr5g1640 534 PANTHER PROTEIN RCC2 4 523 IPR028641 -
Apr5g1640 534 Pfam Regulator of chromosome condensation (RCC1) repeat 246 285 IPR000408 -
Apr5g1640 534 Pfam Regulator of chromosome condensation (RCC1) repeat 75 124 IPR000408 -
Apr5g1640 534 Pfam Regulator of chromosome condensation (RCC1) repeat 127 173 IPR000408 -
Apr5g1640 534 Pfam Regulator of chromosome condensation (RCC1) repeat 184 243 IPR000408 -
Apr5g1640 534 Pfam Regulator of chromosome condensation (RCC1) repeat 352 398 IPR000408 -
Apr5g1640 534 MobiDBLite consensus disorder prediction 458 473 - -
Apr5g1640 534 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 247 302 IPR000408 -
Apr5g1640 534 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 114 124 IPR000408 -
Apr5g1640 534 MobiDBLite consensus disorder prediction 430 534 - -
Apr5g1640 534 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 76 127 IPR000408 -
Apr5g1640 534 SUPERFAMILY RCC1/BLIP-II 17 401 IPR009091 -
Apr5g1640 534 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 181 246 IPR000408 -
Apr5g1640 534 MobiDBLite consensus disorder prediction 509 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1640 Apr-Chr5 20035026 20042833 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1640 - - gmx:100819842 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1640 5 20035026 20042833 Apr5g1640 5 20035026 20042833 ECH