Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1636 ATGGACCATAAAGAAGAACAAAAAATGAGCAAGAGACCACCTCCTGATCCTGTGGCAGTGCTACGAGGACATCGTGCTTCAATCATGGACATTTGTTTTCACCCCTTTAAGCCAATGTTATTCTCCGGTTCTGCTGATGGCGAAGTAAGGATTTGGGATGCCCTTCAGCATAGGACAGTGTCATCAGCATGGCTACATAGTGCTGCCCATGGGATTGTTGCTGTTGCCAGTAGTTCTACCCTTGGAACCAATAGATTTGTCAGCCAGGGTAGGGATGGAACTATAAAAGTTTGGGAATTTGATGATGCTGGTTTGTCCAGGATTCCATCAGTTACAATCAAGACGAACACTTACCACTTTTGCAAGTTTTCCACAGTGAAGAATCATTCTTTTTGGTCAAAAGAAGGGAAAGCATCAAAAGATTGCTATAGGGCAGAGCCAGGAGGAATGTCTGATAGAGAAATTCTGGAGGTTCAAAAAAAGGACGCTTACTCTGATCATAGTTGTTCTGAAAGCTTTGGAGAAAATATGTATAATGAATGTCTACAATATGTGGCTTTGTCAGGGGAAAACTCTTCTGAGGTTGAAATCTGGGATCTCAAGTCAGCTGAAAAATTTATACGATTCCCTTCAAGCAATCCCAGTAACTCTTCAAGTGCTCACAACAAAGGGATGTGCATGGCACTTCAATTGTTTTTACCATATGAATCGCAAGGATTTCTAAATGTCTTGGCTGGATATGAGGATGGTTCCATGCTTTGGTGGGATGTACGGTATCCTGGAGTTCCAGTAACTTCTGTAAAATTCCATTCTGAGCCAGTTCTGAGCATCTGTATTGACGGTTCCTGCAAAGGGGGTATCTCAGGAGCTGCAGATGACAAGATTGTAATGTACAGCTTGGATTATTCTTCGGGTACATGTGTGGTGAAGAAAGAAATCAGTTTGGAGCGACCTGGCATTGCAGGCACCTCAATTCGGCCTGATGGAAAAATTGCTGCAACTGCTGGCTGGGACCACAGGGTGAGGATATATAATTACCGCAAAGGAAATGCTTTAGCTGTTCTAAAGTATCACCATGGCACGTGCAACGCTGTCACTTATTCATCTGATTGTAAACTTATGGCCTCTGCATCGGAAGACACAACCGTGGGACTTTGGGAATTGTATCCTCCTCGAATGTGA 1182 0.434 MDHKEEQKMSKRPPPDPVAVLRGHRASIMDICFHPFKPMLFSGSADGEVRIWDALQHRTVSSAWLHSAAHGIVAVASSSTLGTNRFVSQGRDGTIKVWEFDDAGLSRIPSVTIKTNTYHFCKFSTVKNHSFWSKEGKASKDCYRAEPGGMSDREILEVQKKDAYSDHSCSESFGENMYNECLQYVALSGENSSEVEIWDLKSAEKFIRFPSSNPSNSSSAHNKGMCMALQLFLPYESQGFLNVLAGYEDGSMLWWDVRYPGVPVTSVKFHSEPVLSICIDGSCKGGISGAADDKIVMYSLDYSSGTCVVKKEISLERPGIAGTSIRPDGKIAATAGWDHRVRIYNYRKGNALAVLKYHHGTCNAVTYSSDCKLMASASEDTTVGLWELYPPRM* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1636 393 ProSitePatterns Trp-Asp (WD) repeats signature. 374 388 IPR019775 -
Apr5g1636 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 355 393 - -
Apr5g1636 393 SUPERFAMILY WD40 repeat-like 8 387 IPR036322 GO:0005515
Apr5g1636 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 21 53 - -
Apr5g1636 393 PANTHER - 6 392 - -
Apr5g1636 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 21 62 IPR001680 GO:0005515
Apr5g1636 393 Gene3D - 13 230 IPR015943 GO:0005515
Apr5g1636 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 393 IPR001680 GO:0005515
Apr5g1636 393 PRINTS G protein beta WD-40 repeat signature 40 54 IPR020472 -
Apr5g1636 393 PRINTS G protein beta WD-40 repeat signature 86 100 IPR020472 -
Apr5g1636 393 PRINTS G protein beta WD-40 repeat signature 374 388 IPR020472 -
Apr5g1636 393 Pfam WD domain, G-beta repeat 352 386 IPR001680 GO:0005515
Apr5g1636 393 Pfam WD domain, G-beta repeat 17 53 IPR001680 GO:0005515
Apr5g1636 393 SMART WD40_4 348 387 IPR001680 GO:0005515
Apr5g1636 393 SMART WD40_4 260 299 IPR001680 GO:0005515
Apr5g1636 393 SMART WD40_4 14 53 IPR001680 GO:0005515
Apr5g1636 393 SMART WD40_4 306 345 IPR001680 GO:0005515
Apr5g1636 393 SMART WD40_4 56 99 IPR001680 GO:0005515
Apr5g1636 393 Gene3D - 232 392 IPR015943 GO:0005515
Apr5g1636 393 PANTHER TRANSDUCIN BETA-LIKE 3 6 392 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1636 18 135 Miscellaneous Gene Families AT5G08390 26.190 1.64e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1636 K24770 - gmx:100800482 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1636 5 19992534 19999618 Apr5g1636 5 19992534 19999618 ECH