Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1623 ATGGACGAGGAGAACGGTTACGGTGGAGGTAGCAGCTCTAACTTGGAGACTTCGAAAGCAGAGAGATCGGTGTGGCTGATGAAGTGTCCTTTGGTGGTGGCTAAGTCATGGCAGACTCATCCTCCTTCTCAACCTCTGGCTAAGGTTGTTCTCTCCCTCGATCCTCTTCACCCCGAAGACGATCCCTCTGCTTTTACAATGGAAATGGCTGGCTCTGAAGCTGTGAATATGCCAAAAACTTATTCTTTGAATATGTTTAAAGACTTTGTTCCTATGTGCGTCTTCTCCGAGGCAAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGCCCCATGGTGAAAACATTGAAGAGTATGGTAAACTCTGCCGTGAGAGGACAAACAAATCTATGATAAAAAATCGACAGATTCAGGTTATTGATAATGATCGTGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAATTTCATCCAACTCCAAGAAGACACAGCCAGTTAAGCAATCTGATACAAAGAGAACAAGAAGAGACCGAGGTGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAGGCAGCCTAATTGGGCCTTGAAACAGCTTGTCCAAGAGACTGATCAACCTGCGCAATTCTTGAAAGAGATCCTGAACGAACTGTGTGTATACAATAAAAGAGGGGCCAATCAAGGAACTTACGAACTGAAGCCTGAGTACAAGAAATCTGTTGAAGATACAAGCGCTGAATAA 771 0.4384 MDEENGYGGGSSSNLETSKAERSVWLMKCPLVVAKSWQTHPPSQPLAKVVLSLDPLHPEDDPSAFTMEMAGSEAVNMPKTYSLNMFKDFVPMCVFSEASQGGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLISSNSKKTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTSAE* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1623 256 MobiDBLite consensus disorder prediction 164 186 - -
Apr5g1623 256 Pfam TFIIF, beta subunit N-terminus 21 134 IPR040504 -
Apr5g1623 256 PANTHER TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT 10 254 - -
Apr5g1623 256 CDD TFIIF_beta 14 118 - -
Apr5g1623 256 Gene3D - 182 249 IPR036388 -
Apr5g1623 256 SUPERFAMILY Rap30/74 interaction domains 12 119 IPR011039 GO:0006367
Apr5g1623 256 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 10 254 IPR003196 GO:0005674|GO:0006366|GO:0006367
Apr5g1623 256 Pfam TFIIF, beta subunit HTH domain 184 247 IPR040450 -
Apr5g1623 256 SUPERFAMILY "Winged helix" DNA-binding domain 182 248 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1623 Apr-Chr5 19880716 19886528 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1623 K03139 - gmx:100788473 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1623 5 19880716 19886528 Apr5g1623 5 19880716 19886528 ECH