Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1616 ATGGGCGTCAACAACGGCAAGCTTGTTCTGTTAACATTTGCTATATGTCGTTTGATAGTAACGGTGGGGTTAACGGAGCTGTTCGATGTGGCACTAGAGGGTGGAGTGAGCGTGGAGAGGCAAGAAGTGGAAGCGGCTTCGGTGGATTTCGGGATGTTGGGAAGAGGAGAGGCTTTGGCGGTGGTGCAGGCGGCGTCGGCGGAGGACGTGGGAAAGGCGGTGAAAGCGGCGTTTGAGTGGGGTTTGGCGGTGTCGGCACGAGGGCACGGGCACTCGATAAATGGGCAAGCGTTGATAAAAGGGAAGAAGAAAGGGGTGGTTATAGAAATGGGGAAAAAGGGTGGTGAAGGAATGATAAGAGTGTGTTGGGAAAGAATGTATGTGGATGTGTGGGGTGGGAATTTGTGGATAGAGGTTTTGAGTGCAACATTGGAGTATGGGTTGGCTCCCATGTCTTGGACCGATTACTTGTATTTGTCTGTGGGTGGAACCCTATCCAACGCTGGGATCAGTGGACAGACCTTCAATCACGGTCCTCAGATCACCAATGTTTATGAGCTCGATGTCGTTACTGGAAAGGGTGAACTGTTGACGTGTTCAGAAGATCGTAACTCAGAGTTGTTCCATGCGGTTCTTGGAGGTCTTGGACAATTCGGAATCATCACAAGGGCTAGAATTGCTCTCGAACCAGCTCCTCAGAGAGTTCGTTGGATACGAGTACTGTACTCCAATTTTTCAACCTTCTGTAAGGACCAGGAGTTTCTCATCTCTCTGCATGGGAAACCAGCAAGGCAGAGATTCGACTATGTAGAGGGTTTCGTGATAGTGGATGAAGGGCTCATCAATAATTGGCGATCTTCATTCTTTTCACCAAGTAACCCTGTCAAAATCACTTCCCTCAAAGCTGACGGAGGTGTTTTGTACTGTTTGGAGATTACCAAAAATTACAACCAAGAGAACGCCGATTTTGTTGATGAGGAGATAGAGGGTCTATTGAAAAAGTTAGATTTTATACCAACATCGGTGTTCACAACGGATCTGCCTTATGTGGATTTTCTGGATCGTGTACATAAGGCTGAGCTCAAGCTTAGAGCCAAGGGTTTATGGGACGTCCCTCATCCATGGCTCAACCTTTTTGTTCCAAAATCAAGGATAGCGGACTTCGACAAGGGTGTGTTCAAGGGCATTCTGGGAAACAAGACAAGTGGGCCTATCCTCATTTACCCTATGAACAAAAACAAGTGGGACCATCGGAGCTCGGTGGTGATACCAGAAGAGGAGGTGTTTTACCTGGTGGCATTTCTGAGATCAGCATTGGATACTGAGACACTGGAGTACCTGACTAATCAGAACCGTCAGATTCTGAGATTCTGCCATGATTCGGAGATCAAGGTGAAACAGTATCTGCCCCATTACACAACACAGCAGGAGTGGATGGACCACTTTGGAGATAAGTGGACCCAATTCAATGCCAGGAAAATGCAATTCGATCCTCGACGAATCTTAGCCACGGGCCAACAAATATATGAATTTGAGCCCTCCCTCTCCGTCACCAAGGATGACATGTAG 1569 0.4774 MGVNNGKLVLLTFAICRLIVTVGLTELFDVALEGGVSVERQEVEAASVDFGMLGRGEALAVVQAASAEDVGKAVKAAFEWGLAVSARGHGHSINGQALIKGKKKGVVIEMGKKGGEGMIRVCWERMYVDVWGGNLWIEVLSATLEYGLAPMSWTDYLYLSVGGTLSNAGISGQTFNHGPQITNVYELDVVTGKGELLTCSEDRNSELFHAVLGGLGQFGIITRARIALEPAPQRVRWIRVLYSNFSTFCKDQEFLISLHGKPARQRFDYVEGFVIVDEGLINNWRSSFFSPSNPVKITSLKADGGVLYCLEITKNYNQENADFVDEEIEGLLKKLDFIPTSVFTTDLPYVDFLDRVHKAELKLRAKGLWDVPHPWLNLFVPKSRIADFDKGVFKGILGNKTSGPILIYPMNKNKWDHRSSVVIPEEEVFYLVAFLRSALDTETLEYLTNQNRQILRFCHDSEIKVKQYLPHYTTQQEWMDHFGDKWTQFNARKMQFDPRRILATGQQIYEFEPSLSVTKDDM* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1616 522 PANTHER CYTOKININ OXIDASE 5-RELATED 9 511 - -
Apr5g1616 522 Gene3D - 235 468 IPR016170 -
Apr5g1616 522 ProSiteProfiles PCMH-type FAD-binding domain profile. 54 231 IPR016166 GO:0071949
Apr5g1616 522 Gene3D - 110 233 IPR016169 -
Apr5g1616 522 PANTHER GULONOLACTONE OXIDASE 9 511 - -
Apr5g1616 522 SUPERFAMILY FAD-binding/transporter-associated domain-like 33 230 IPR036318 GO:0050660
Apr5g1616 522 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 232 509 IPR015345 GO:0009690|GO:0019139|GO:0050660
Apr5g1616 522 SUPERFAMILY FAD-linked oxidases, C-terminal domain 232 508 IPR016164 GO:0003824|GO:0050660
Apr5g1616 522 Pfam FAD binding domain 59 200 IPR006094 GO:0050660
Apr5g1616 522 Gene3D - 46 509 IPR016167 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1616 Apr-Chr5 19810874 19817966 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1616 K00279 - gmx:100790584 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1616 5 19810874 19817966 Apr5g1616 5 19810874 19817966 ECH