Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1615 ATGTTGATTCGGCGATTGCCTTGGACGGCGATTTCTGTGGGCTCACCACTTCCGTTGAATTTCGGCGCTATGTATGGAGCAAGCATTCCCATGCGCAAGCAACTCACCGTTTCCCTTTTCTCCTTCTGCTCTAGCTCTGGCTTCCATCCCCCTCCTCAATCACAAAAACCTGTTAACGAAACGGATAATCGTCACTCGCAGTCTCTGAAACCCGGTCTTTATCTCGTTGGAACACCGATTGGAAATCTCGAAGACATTACCCTGAGGGCTCTTCGCGTGCTGAATTCTGCTGATGTCATACTCTCAGAGGACACGAGACACTCTGGGAAGTTGCTTCATCACTACAATATCAAAACACCCCTTATGAGTTATCACAAATTCAATGAATCACAAAGGGAACAGATTGTGCTGAAGAGGCTGAAGCAGGGTGAGATTGTGGCACTTATAAGTGATGCTGGAATGCCAGGTATCAGTGATCCTGGTATGGAGTTGGCCAAATTATGTGTTAGTGAAAATATCCTGGTTGTTCCTATCCCTGGTCCCTGTGCTTTGGTATCGGCTCTTTCTGCATCAGGTTTACCAACTGATGAATTTACATTTGTTGGTTTTCTTCCAAAGCATTCAGGTTCAAGAAGAAAAAGGCTTATGGTTTCAGCTGATCAAACAACAACACAAATATTTTATGTTCCTCCTCACAAACTTTCTCAATTTCTTGAAGAGTGTTCTTCAATATTTGGTGATACGAGGATATGTGTTATTGCTCGGGAAATGACCAAGTTACATGAAGAGTTTTGGCGTGGTACTCTTGGTGAAGCCAAGGAATTATTTTCTATTCGTCAAGTGAAGGGAGAACTTACCATATTGATTGAAGGACAAGCAAATTCTAAAGTTGAAACTCCGTCTCACATTCAGCTTGAGAGTGAACTAAGAGAACTGATTGCAAGTGGCGCGAGTCTTTCCACAGCTGTGAAATTGGTTACCGGCAGATCATCAGTGAGTAGAAAAACTATATATTCACTTGCACTAAGAAAATTTGGGAAGCAACCCGAAGTGGAAGATGATTCAAACTAG 1071 0.4295 MLIRRLPWTAISVGSPLPLNFGAMYGASIPMRKQLTVSLFSFCSSSGFHPPPQSQKPVNETDNRHSQSLKPGLYLVGTPIGNLEDITLRALRVLNSADVILSEDTRHSGKLLHHYNIKTPLMSYHKFNESQREQIVLKRLKQGEIVALISDAGMPGISDPGMELAKLCVSENILVVPIPGPCALVSALSASGLPTDEFTFVGFLPKHSGSRRKRLMVSADQTTTQIFYVPPHKLSQFLEECSSIFGDTRICVIAREMTKLHEEFWRGTLGEAKELFSIRQVKGELTILIEGQANSKVETPSHIQLESELRELIASGASLSTAVKLVTGRSSVSRKTIYSLALRKFGKQPEVEDDSN* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1615 356 CDD RsmI 74 290 IPR008189 GO:0008168
Apr5g1615 356 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 73 272 IPR000878 GO:0008168
Apr5g1615 356 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 55 352 - -
Apr5g1615 356 ProSitePatterns RsmI AdoMet-dependent methyltransferase protein family signature. 150 161 IPR018063 GO:0008168
Apr5g1615 356 Gene3D - 180 297 IPR014776 GO:0008168
Apr5g1615 356 SUPERFAMILY Tetrapyrrole methylase 71 289 IPR035996 GO:0008168
Apr5g1615 356 Hamap Ribosomal RNA small subunit methyltransferase I [rsmI]. 72 291 IPR008189 GO:0008168
Apr5g1615 356 Gene3D - 57 179 IPR014777 GO:0008168
Apr5g1615 356 TIGRFAM TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 73 342 IPR008189 GO:0008168
Apr5g1615 356 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 55 352 IPR008189 GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1615 K07056 - gmx:100819709 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1615 5 19805212 19811966 Apr5g1615 5 19805212 19811966 ECH