Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1611 ATGACGGACGCAGAAGATGCCGTACGACGCCGTAATGCGGTGGCAGATTATCGAAAGAAACTTCTTCAGCACAAGGAATTGGAATCCAGAGTGCGATCCGTCAGGGAGAATTTGCGAGCTTCAAAGAAAGAGTTCAATAAAACTGAAGATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATCATTGGCGAAGTTCTAAGGCCTCTTGACAATGAACGCTTGATAGTTAAAGCAAGCAGCGGTCCCAGATATGTGGTTGGCTGCCGTAGTAAAGTGGATAAGGAAAAATTAACTTCTGGGACAAGAGTGGTTCTTGACATGACAACACTCACCATAATGCGTGCTCTTCCTCGAGAAGTTGATCCAGTGGTTTACAATATGCTGCATGAAGATCCCGGTAATGTCAGTTACTCAGCTGTTGGTGGGTTATCTGATCAGATCAGGGAATTGAGGGAATCAATTGAACTCCCTCTGATGAATCCTGAGCTCTTTCTTCGGGTTGGAATTAAACCTCCAAAGGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTGGCCAGGGCAATTGCCAGTAATATAGATGCTAACTTCCTAAAGGTTGTTTCAAGTGCTATTATTGATAAGTACATTGGAGAAAGTGCCAGGTTAATAAGAGAGATGTTTGGTTATGCACGTGATCACCAGCCCTGCATCATTTTTATGGATGAAATCGATGCCATTGGTGGTCGTCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAAATTCAGAGAACACTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTTGGGAAGGGATTTAACGGGGCTGATCTTCGAAATGTCTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAGCGTGATTACGTGATCCACGAAGATTTTATGAAGGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCTAGTGCACACTACAGTGCTGATTTTGGTAAAGAGTAG 1005 0.4388 MTDAEDAVRRRNAVADYRKKLLQHKELESRVRSVRENLRASKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYSADFGKE* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1611 334 Gene3D - 128 290 IPR027417 -
Apr5g1611 334 Gene3D - 23 127 IPR012340 -
Apr5g1611 334 CDD AAA 141 269 - -
Apr5g1611 334 Pfam AAA+ lid domain 278 309 IPR041569 -
Apr5g1611 334 Pfam ATPase family associated with various cellular activities (AAA) 175 275 IPR003959 GO:0005524|GO:0016887
Apr5g1611 334 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 275 334 - -
Apr5g1611 334 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 2 277 - -
Apr5g1611 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 319 IPR027417 -
Apr5g1611 334 Coils Coil 24 58 - -
Apr5g1611 334 PANTHER BNAC02G30020D PROTEIN 2 277 - -
Apr5g1611 334 PANTHER BNAC02G30020D PROTEIN 275 334 - -
Apr5g1611 334 Pfam Proteasomal ATPase OB C-terminal domain 62 117 IPR032501 -
Apr5g1611 334 SMART AAA_5 171 310 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1611 Apr-Chr5 19776702 19780506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1611 134 273 Miscellaneous Gene Families AT3G47060 41.958 3.84e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1611 K03064 - gmx:100794489 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1611 5 19776702 19780506 Apr5g1611 5 19776702 19780506 ECH