Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1610 ATGGGATCGGCTTGTTGTGTTGCTGCGAAGGATCATACTATTCCCAACAGAGCTGGAGGTGAAGGCTTACATAGAAATGCCGTATGCTCACCATCATGGAGTTTCCGATGGGATAGTTGGGGCCGTGTTGCTGGTGAAATTGAGGATCCTTCCTCTCATGCATCTCACAGAATCAGCAGAAATGTCAGCATGGAGTTAAAATTAAGTTCTGAAAGAGGCACTCTATCTGATGGGGGGAGTACCCTGGAGAATTCTGTAACACCAATGTCTCAGAAGTCCCCTGTTCGTGAGCATTTGGTTACAAGTCTGATGACTCCCTCTTCTGATCTATCCTTGTCAAGTAATTGCTCTGCAGTGGTGAAGACTCTGATTGAATCATCAGAGATTGCCGAGTCTTCAATTCCAAATCTTTCATTTTCAATACCTTCAGTTTTCTCAACACCTACAACAGATCCAATGCCTAATCATAATTATCACAATCTTCCTAACTCAACACCATCCAGATGGGCTCATCGCTCTCCAGGACACCCGCTGTTGCGACAAATTTCTGATAGTCGGATTCTGGGTTTGAAATCACCTGACAACTCAATGTCTGAAGGAAGGCCATCGTTTGTACTCTCCAATTGCAGCAATGATATAGCTACAGGATCCCAATGTGGGTCATCTGATGGCTGGTCTATGCGGACCTTTTCTGAGCTGGTGGCTTCATCGCAAAAGGAAAGGTGGTCTTTTGACAGTGAGTATTTAGGTTCAGGTCGTCACAAGATAAGTGGAACTAGTGGCAGGTTTTCGTATTCTCCCTCCATGGATTTGCAATCTTGTGGGGCTTGCTCCAAGCTCTTGACTGAGAGATCTGCGTGGAGCAGCCAGAAATTTATTGCCAGCAGTGACCTCTCAGTTGTTGCTGTACTGGTTTGTGGTCACGTGTATCATGCAGAATGCTTGGAAACTATGACATCAGAGGCAGATAGTTATGATCCAGCTTGTCCTATTTGTATGGTTGGAGAGAAGCAATTATCAAAGTTATCCAAAAAAGGTCCTAGAACTGAATCAGAGATTAGGGCCAAGAACTACAAGATATCAAGAAACCGAGTAGTTGACAGCTACCTAGATAGTGGGTTAGATGTTTTTGATCGCCAAAAAGATATAGTTTCAAAAATGGAGCCAAGCTCCAGTACGAGGAAGAGTTCATTTGGAAAGCCCTTCTTGAGGCGGCATTTTTCATTGGGAACCAAGTGGAGCCGTTCCCTATCTGTGAATGATTCTGCCAGGAAGAAGGGCTTTTGGGCGAGATATCGTAAAGATTGA 1308 0.445 MGSACCVAAKDHTIPNRAGGEGLHRNAVCSPSWSFRWDSWGRVAGEIEDPSSHASHRISRNVSMELKLSSERGTLSDGGSTLENSVTPMSQKSPVREHLVTSLMTPSSDLSLSSNCSAVVKTLIESSEIAESSIPNLSFSIPSVFSTPTTDPMPNHNYHNLPNSTPSRWAHRSPGHPLLRQISDSRILGLKSPDNSMSEGRPSFVLSNCSNDIATGSQCGSSDGWSMRTFSELVASSQKERWSFDSEYLGSGRHKISGTSGRFSYSPSMDLQSCGACSKLLTERSAWSSQKFIASSDLSVVAVLVCGHVYHAECLETMTSEADSYDPACPICMVGEKQLSKLSKKGPRTESEIRAKNYKISRNRVVDSYLDSGLDVFDRQKDIVSKMEPSSSTRKSSFGKPFLRRHFSLGTKWSRSLSVNDSARKKGFWARYRKD* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1610 435 MobiDBLite consensus disorder prediction 71 95 - -
Apr5g1610 435 ProSiteProfiles Zinc finger RING-type profile. 274 332 IPR001841 -
Apr5g1610 435 CDD RING-H2 299 333 - -
Apr5g1610 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 334 IPR013083 -
Apr5g1610 435 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 1 429 - -
Apr5g1610 435 SUPERFAMILY RING/U-box 273 333 - -
Apr5g1610 435 SMART ring_2 274 332 IPR001841 -
Apr5g1610 435 PANTHER EXPRESSED PROTEIN 1 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1610 Apr-Chr5 19772174 19775838 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1610 - - gmx:100793040 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1610 5 19772174 19775838 Apr5g1610 5 19772174 19775838 ECH