Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1603 ATGTCTACCAACCTTTGCTTTGAAGGATTGGATGAAAGAAGAGAGAGGAAATCGGTTATTGAGAATAATAATTCAGAGGATGATAAGTGGACAAGAATTGGAAGCCTAAAGAAGAAAGCATTAAACGCGTCCAGCAAATTCAGGCATTCTCTTAAGAAGAGAAAAAGCCGAAAAAGTGTTAGCCGAAGCACTTCCCTTTCCATTGAGGATGTTCGCGATGTTAAGGACCTTCAAGCAGTTGATGCATTTCGACACACACTTGTGTTAGACAGCATGCTGCCTCCAATCCATGATGACTATCATATGCTATTGAGATTCTTGAAAGCAAGAAAGTTTGATATTGAGAAAGCAAAGCACATGTGGGCTAACATGATCCAATGGAGGAAGGAATATGGTACAGATACAATTTTAGAGGACTTTGAATTTGAGGAGTTGGATGAAGTCCTGAAGTACTATCCACATGGTTATCATGGTGTAGATAAGGAAGGAAGGCCAGTTTATATTGAGAGGCTGGGAAAAGTTGATGCCAATAAGCTTATGCAAGTAACTACCATCGAAAGGTATTTGAGATACCATGTGCAGGGCTTTGAGAAAGCATTTTCTGTTAAGTTTCCAGCTTGCTCTATAGCTGCTAAGAGACACATAGATTCAAGTACAACCATTTTGGATGTTCAAGGCGTGGGTTTCAAAAACCTAACCAAGTCTGCAAGGGAACTCATCACCAGGCTGCAGAAGATTGATGGTGATTTCTATCCTGAAACACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATGCTCTGGAACACGGTGAAGACATTTCTTGATCCCAGAACTACTTCAAAGATTCATGTTCTTGGAAACAAGTTCCAGAGTAAATTACTTGAGATTATCGATGAGAGTGAGCTGCCAGAATTTCTTGGGGGTAGGTGCACTTGTGTAGATCAGGGTGGTTGTATGAGGTCTGATAAAGGACCATGGCAAGATCCCAACATTTTAAAGATGGTTCTTAGTGGTGAAGTGGGATGTTCTAAACAAATAGTAACAGTTTCTAACGAAGGGGGGAGGGTGATCGAATGTGATAAGACATCTTATTCAATGATAAGAGGTAGTGATACATCTGCAGGAGAATCAGGATCAGAAGTTGAGGATATAGTTTCTCCCAAAGCAAGTGGGAATTGTATAAGCCCTATGTTAACTCCTGTCCAAGAAGAAGTAAGATTGGTTGGTAAGTCTAGTCATGCTCAGTATGATGAGTATGTTCCCATGGTTGACAAGGCCGTTGATGTTGTTGGATCGAAGGAGCAGCAATCTACACCTCAAAAGTCATTTGGCTTAACAGCGGGCTTCTTTTTGGCCCTTTTTACTTTTGCTCGTTCAATAGCGTTTCGTTTCACTAAAGGAATACGGGACTTTGAATCTGATTCAATATCCAAGGAGGAATCTCGTCCTCCTTCACCTGTTCCCGGGTTCACAAAGGAAAATCTTCCATCATCTACCTTAAAACGCCTTGGTGAGCTTGAAGAGAAAGTTGACACGCTACAGTCAAATCTTAATGTGATGCCACATGAGAAAGAGGAGCTGCTGAATGCTGCAATTTATCGTGTGGATGCATTGGAAGCAGAGCTGATTTCTACCAAGAAGGCTTTATTCGAAGCTTTGATGAGACAAGAAGAACTTCTTGCTTATATAGACGGTCAGAATAAAGGGAAATCCAAGAGAAAGATTTGGCGGTGA 1746 0.4107 MSTNLCFEGLDERRERKSVIENNNSEDDKWTRIGSLKKKALNASSKFRHSLKKRKSRKSVSRSTSLSIEDVRDVKDLQAVDAFRHTLVLDSMLPPIHDDYHMLLRFLKARKFDIEKAKHMWANMIQWRKEYGTDTILEDFEFEELDEVLKYYPHGYHGVDKEGRPVYIERLGKVDANKLMQVTTIERYLRYHVQGFEKAFSVKFPACSIAAKRHIDSSTTILDVQGVGFKNLTKSARELITRLQKIDGDFYPETLCQMFIINAGPGFKMLWNTVKTFLDPRTTSKIHVLGNKFQSKLLEIIDESELPEFLGGRCTCVDQGGCMRSDKGPWQDPNILKMVLSGEVGCSKQIVTVSNEGGRVIECDKTSYSMIRGSDTSAGESGSEVEDIVSPKASGNCISPMLTPVQEEVRLVGKSSHAQYDEYVPMVDKAVDVVGSKEQQSTPQKSFGLTAGFFLALFTFARSIAFRFTKGIRDFESDSISKEESRPPSPVPGFTKENLPSSTLKRLGELEEKVDTLQSNLNVMPHEKEELLNAAIYRVDALEAELISTKKALFEALMRQEELLAYIDGQNKGKSKRKIWR* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1603 581 CDD SEC14 148 312 IPR001251 -
Apr5g1603 581 Pfam CRAL/TRIO domain 150 312 IPR001251 -
Apr5g1603 581 SMART CRAL_TRIO_N_2 99 124 IPR011074 -
Apr5g1603 581 MobiDBLite consensus disorder prediction 477 498 - -
Apr5g1603 581 SMART sec14_4 144 315 IPR001251 -
Apr5g1603 581 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 3 579 - -
Apr5g1603 581 Pfam CRAL/TRIO, N-terminal domain 100 123 IPR011074 -
Apr5g1603 581 PRINTS Cellular retinaldehyde-binding protein signature 102 124 - -
Apr5g1603 581 PRINTS Cellular retinaldehyde-binding protein signature 271 290 - -
Apr5g1603 581 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 144 318 IPR001251 -
Apr5g1603 581 Gene3D - 132 342 IPR036865 -
Apr5g1603 581 SUPERFAMILY CRAL/TRIO N-terminal domain 76 140 IPR036273 -
Apr5g1603 581 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 579 - -
Apr5g1603 581 SUPERFAMILY CRAL/TRIO domain 143 338 IPR036865 -
Apr5g1603 581 Gene3D - 69 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1603 Apr-Chr5 19720651 19725177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1603 78 309 Acyl Lipid Metabolism Gene Families AT5G47730 30.041 3.06e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1603 - - aprc:113866392 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1603 5 19720651 19725177 Apr5g1603 5 19720651 19725177 ECH