Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1561 ATGGCATCTTCCAAATGGTTATTCTCTTATAAGAACTTGTTCAAGATAATAACCTTTCCGTGCTTAGCTCCTTCCACAACGCCCAAATCATTACCGGCTATTGACGGTGACACTGCGCCTCCCCTGATTGGGCCGTCGAACGAGCACGGCCCAAAAGACGACGAGAGGCTCAAAGATGTTTTTGATCACTTGGACGTTGACAAAGATGGTAAAATTTCAAGCAAGGAACTAACGGATTATTTTGCGTCGGTGGGTGAGTCGGTGAGCCATAAAGTGGCGATGAGGGTGATAAATGAGTTCGACTCTGACGGTGATGAGTTACTTGATTTCGCGGACTTTGTCAGACTTATGAAAGAAGAGGAAAGCGATGAGTTGGAGGATATTCTAAGAAGCGCATTTGAAATGTTTGAGGTTGAGAAGGGGTGTGGTTGCATAACGCCCAAGGGGTTGCAGCAGATGTTGCGCCAACTGGGTGACGTTAAATCTCAGGATGAGTGTGCGGCCATGATTCGAGCCTTCGATCTTGATGGCAATGGCTTCCTTGATTTTCATGAATTTCAGCAGATGATGTCCCCAGCTACTTAG 585 0.465 MASSKWLFSYKNLFKIITFPCLAPSTTPKSLPAIDGDTAPPLIGPSNEHGPKDDERLKDVFDHLDVDKDGKISSKELTDYFASVGESVSHKVAMRVINEFDSDGDELLDFADFVRLMKEEESDELEDILRSAFEMFEVEKGCGCITPKGLQQMLRQLGDVKSQDECAAMIRAFDLDGNGFLDFHEFQQMMSPAT* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1561 194 SUPERFAMILY EF-hand 49 191 IPR011992 -
Apr5g1561 194 ProSitePatterns EF-hand calcium-binding domain. 174 186 IPR018247 -
Apr5g1561 194 Pfam EF-hand domain pair 55 118 IPR002048 GO:0005509
Apr5g1561 194 SMART efh_1 165 193 IPR002048 GO:0005509
Apr5g1561 194 SMART efh_1 56 84 IPR002048 GO:0005509
Apr5g1561 194 SMART efh_1 92 120 IPR002048 GO:0005509
Apr5g1561 194 ProSiteProfiles EF-hand calcium-binding domain profile. 52 87 IPR002048 GO:0005509
Apr5g1561 194 ProSitePatterns EF-hand calcium-binding domain. 65 77 IPR018247 -
Apr5g1561 194 PANTHER CALMODULIN 39 191 - -
Apr5g1561 194 ProSiteProfiles EF-hand calcium-binding domain profile. 161 194 IPR002048 GO:0005509
Apr5g1561 194 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Apr5g1561 194 MobiDBLite consensus disorder prediction 32 54 - -
Apr5g1561 194 Gene3D - 123 193 - -
Apr5g1561 194 Gene3D - 44 122 - -
Apr5g1561 194 Pfam EF hand 165 191 IPR002048 GO:0005509
Apr5g1561 194 PANTHER CALCIUM BINDING PROTEIN 39 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1561 Apr-Chr5 19450631 19451215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1561 3 191 EF-hand Containing Proteins AT3G50770 45.876 4.72e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1561 K13448 - gmx:100775336 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1561 5 19450631 19451215 Apr5g1561 5 19450631 19451215 ECH