Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1560 ATGGCTAAATCAAGCGCTGATGACGCTGAGCTCCGCCGAGCTTGCCAGGCTGCAATTGAGGGCACTAAGCATAAGGTCGTTCTCTCCATCCGAACTGTGAAGACTCACGGCACCTGGGGAAAATCTGCCAAGCTTGGACGTCAAATGGCTAAGCCTAGGGTTCTCGCTCTCTGCACAAAAGCAAAAGTTCAGCGGACAAAAGCTTTTCTTCGAGTTTTAAAGTATTCATCGGGAGGAGTTCTTGAGCCTGCTAAGATATACAAGCTGAAGCACATCTCGAAAGTGGAAGTTGTTTCAAATGATCCCAGTGGATGTACATTTACGCTGGGATTTGATAACCTTAGAAGCCAGAGTGTGGCTCCTCCACAGTGGACTATGCGCAATACTGACGACAGGAATCGCCTCCTGCTTACTATCTTAAATATCTGCAAAGATGTCCTGGGTCGCCTTCCTAAGATTGTTGGTATTGATGTTGTGGAGATGGCACTTTGGGCTAAGGAAAATAAACCTGCAGTTTCCACTCAAAGTAACCAACAAGATGGTGCTTCTGTTGAATCTGCCGTGACTGATGCAGAATTGAAAGTCAATGTTGAGAAGGAACTTGTCAGCCAGGAAGAGGAAGAGGACATGAAGGCTCTTTTGGGAAATTATATCATGGGTATTGGAGAAGCAGAGGCATTTTCTGAAAGGTTAAAAAGAGAGCTCCAGGCTCTAGAAGCAGCAAATGTGCACGCCATTTTAGAAAGTGAACCTTTGATAGATGAGGTGTTGCAAGGGCTTGAAGCAGCAACTATTTGTGTCGAAGACATGGATGAGTGGTTAGGCATGTTCAATGTAAAACTCCGACACATGAGGGAAGATATTGAATCAATTGAAACCCGCAACAACAAGTTGGAAATGCAATCAGTAAATAACAAATCTCTCATTGAAGAGCTTGATAAGCTTCTTAAGCAATTGAGTATCCCGGATGAGTACTCCGCGTGCTTGACAGGAGATTCATTTGAGGATGCGCCGGTGCTTCAAAATATAGAAGCGTGTGAGTGGTTGACAACTGCAATGCGTGGTCTAGAAGTGCCTCACATAGATCCTACTTATGCAAAGATGAGAGCAGTTAAAGAGAAGCGAGGAGAACTTCAAATAATAAAGTCTACTTTTGTTGGGAGAGCTTCTGAATACGTGAGAAGTTACTTTGCTACTTTTGTGGACTTCATGTTAAATGACAAAAATTACTTTTCTCAGCGTGGACAGTTGAAAAGGCCAGATCATGCTGACTTACGGTACAAGTGCAGGACATATGCCCGCCTTCTGCAGCATTTAAAGATTCTTGATAAGAATTGCTTGGGCCCACTGAGAAAATCTTATTGCAGTTCTCTAAATCTGCTTCTTCGCAGGGAGGCCCGCGAGTTTGCCAATGAACTTCGTGCTAGTACTAAAACTTCTAAATCTACAACTGTTTGGCTTGAAAGTTTCACAGGTTCTGGTCAAAATGTAAATTCTACGGACACTTCTACAGTTACTGATGCATATGCCAAAATGCTCACAATTTTTATTCCACTTCTGGTGGATGAGAGCACTTTTCTTGCACACTTCTTGTGCTTCGAAGTACCTACACTTGTTGATGGTAATAAAAATGGACACAATGACGATGCTAATGATGATTTGGGAATTATGGACATTGATGAGAATGACAGTAAATCCAGTAAAAATCCTGCGGATGTTGCAGCTTTAAATGAATCACTTCAGGATTTGCTTGATGGGATTCAAGAAGACTTCTATGCTGTTGTGGATTGGGCATATAAGATTGATCCCTTATGCTGCATATCAATGCATGGAACTACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACACCTTTTGCTCGATGACCTGGAGTCTCGAATATCTATACAGTTCAGCCGTTTTGTTGATGAAGCTTGCCATCAGATTGAAAGAAATGAGCGCAATGTTCGCCAAACGGGTGTCCTACCGTACATTCCCAGATTTGCCTCCCTTGCAACCCGGATGGAGCAGTATGTTGCGGGACAGTCGAGGGATTTGGTTGACCAAGCATACACAAAACTTGTTAGCATAATGTTTGTAACTTTGGAAAAAATTGCACAGATAGATCCAAAGTATGCAGATATTTTTCTTATAGAGAACTATGCTGCTTTTCAGAATAGTTTGTATGAACTTGCCAATGTTGTGCCCACTTTAGCCAAGTTTTATCATCAGGCTAGTGAAGCCTATGAGCAAGCTTGCACACGCCATATTAGTATGATTATCTACTATCAATTTGAACGCCTTTTTCAGTTTGCTCGAAGGATTGAGGACTTAATACTCAATAATGTTGCCCCTGAAGAGATACCTTTCCAGCTTGGGCTGTCCAAAGTGGATCTTCGGAAGACCCTAAAATCCAGCTTATCCGGGGTGGACAAGTCCATTGCAGCAATGTATAAGAAATTGCAGAAGAACTTGACTTCGGAGGAACTGCTACCCTCCTTGTGGGATAAATGCAAGAAGGATTTTCTCGATAAGTACGACAGTTTTGTCCAACTTGTCGCCAAGATTTACCCAGCTGAGTCAGTCCCATCTGTTGCAGAGTTGCGAGACCTTTTAGCTACCATGTAA 2643 0.4279 MAKSSADDAELRRACQAAIEGTKHKVVLSIRTVKTHGTWGKSAKLGRQMAKPRVLALCTKAKVQRTKAFLRVLKYSSGGVLEPAKIYKLKHISKVEVVSNDPSGCTFTLGFDNLRSQSVAPPQWTMRNTDDRNRLLLTILNICKDVLGRLPKIVGIDVVEMALWAKENKPAVSTQSNQQDGASVESAVTDAELKVNVEKELVSQEEEEDMKALLGNYIMGIGEAEAFSERLKRELQALEAANVHAILESEPLIDEVLQGLEAATICVEDMDEWLGMFNVKLRHMREDIESIETRNNKLEMQSVNNKSLIEELDKLLKQLSIPDEYSACLTGDSFEDAPVLQNIEACEWLTTAMRGLEVPHIDPTYAKMRAVKEKRGELQIIKSTFVGRASEYVRSYFATFVDFMLNDKNYFSQRGQLKRPDHADLRYKCRTYARLLQHLKILDKNCLGPLRKSYCSSLNLLLRREAREFANELRASTKTSKSTTVWLESFTGSGQNVNSTDTSTVTDAYAKMLTIFIPLLVDESTFLAHFLCFEVPTLVDGNKNGHNDDANDDLGIMDIDENDSKSSKNPADVAALNESLQDLLDGIQEDFYAVVDWAYKIDPLCCISMHGTTERYLSGQKADAAGFVHLLLDDLESRISIQFSRFVDEACHQIERNERNVRQTGVLPYIPRFASLATRMEQYVAGQSRDLVDQAYTKLVSIMFVTLEKIAQIDPKYADIFLIENYAAFQNSLYELANVVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFARRIEDLILNNVAPEEIPFQLGLSKVDLRKTLKSSLSGVDKSIAAMYKKLQKNLTSEELLPSLWDKCKKDFLDKYDSFVQLVAKIYPAESVPSVAELRDLLATM* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1560 880 PANTHER SEC3/SYNTAXIN-RELATED 1 880 - -
Apr5g1560 880 Coils Coil 188 208 - -
Apr5g1560 880 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Apr5g1560 880 Coils Coil 221 248 - -
Apr5g1560 880 MobiDBLite consensus disorder prediction 550 570 - -
Apr5g1560 880 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Apr5g1560 880 Coils Coil 281 318 - -
Apr5g1560 880 Pfam Exocyst complex component Sec3 224 493 IPR019160 GO:0000145|GO:0006887
Apr5g1560 880 Pfam Exocyst complex component Sec3 505 863 IPR019160 GO:0000145|GO:0006887
Apr5g1560 880 MobiDBLite consensus disorder prediction 550 567 - -
Apr5g1560 880 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1560 Apr-Chr5 19426183 19439681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1560 1 880 EF-hand Containing Proteins AT1G47550 80.225 0.0 1495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1560 K19983 - gmx:100800803 1566.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1560 5 19426183 19439681 Apr5g1560 5 19426183 19439681 ECH