Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1520 ATGAAGTTGGCTTCCAATCCTAATCCGTCGTCGTTTCACTCTCTGTTCCAAAATGCTAGGCATGCACTCTTCATCTTTCGACAACTTTTAGAGGCTAATGCCAATCCCAACGACGTTACTTTTTCGTTACTCATCAAAGCATGCCTTTCATCCTCTTGCGGTTCATCATCCACTGAGAGGCTACAAGTAAACCAGATTCAAACCCAGTTGTTGAAACGTGGCATTAACCAATTCCTTTATGTAAATACTGCTCTTATAGATTTCTACATGAAACTTGGGTTTTCCTCTCATGCACGCCAACTGTTTGAAGATATGGCTTTTAGAGATGTTGTTTCGTGGAACGTATTGATTTGTGGATATTCACAAAATGGGCATTCTTATGATGCTCTTCAACTCTTTGTTCAGATGCTAAGAGAGACTTTTAGACCTAACCAAACAACAATCGTTAGCTTGCTACCTTCTTGCTGTCGTCCTGAGCTGATTCTTCAAGGTAGATCCATTCATGGGTTTGGAATCAAAGCTGGCCTTGGTTGGGATCCACAATTGAAGAATGCCCTTACTTCAATGTATGCTAAATGTGATGACTTGGATGCATCACAGCTCTTATTTGAAGAGAGGGCTGAGCGGAATGTTGTCTCATGGAATACCATGATTGGTGCATATAGCCAAAAGGGATTTTTGGACAAGGCAATGTCGTGCTTTAAAGAGATGCTGAAGGAAGGTTTGCAACCAAGTCCGGTGACAATGATGAACCTTATGTCGGCAAATGTGGTTCCAGAAACTGTCCATTGCTATGTTGTCAAATGTGGCTTTACCAGTGATGCTTCTGTGGTTACGTCGCTAGTTTGTCTATATGCAAAGCAAGGGTACACAGATGCGGCAAAATTGCTTTACAGGCATTTCCCCACCAAAGACCTGGTTTCGTTAACTTCAATCATTTCTAGCTATTCTGAAAAAGGTGACGTGGAGTCTGCGGTTGAATGTTTTATCGAAACGCAGCATTTAGACATCAAGTCTGATGCAGTTGCCTTGATTAGTGTCCTTCATGGAATTAACAATCCTTCTCATTTTGCAATTGGATCTGCTTTCCATAGTTATGGGTTGAAGAAAGGGTTGACTAATGATTGCTTGGTTGCAAATGGGCTAATTAGCATGTATTCGAGATTCGATGAGATAGAAACTGCTTTGTCCTTGTTTTTTGACGTTAGTGAAAAAACACTAATCACTTGGAACTCTCTGATATCTGGCTGTGTGCAGGCTGGAAAATCAAGTGATGCCATGGAGTTGTTCTGCCAAATGAACACGTGTGGACAAAAACCGGATGCCATTACTATTGCTAGTCTACTATCGGGGTGTTGCCAAGTTGGGTACCTGCGGATTGGAGAGACACTGCATGACTATATCCTTAGGAACAATGTGAAAGTGGAAGATTTTACAGGAACTGCTCTAATAGATATGTATACTAAGTGTGGCAGATTAGATTATGCTGAAAAGGTATTTTGTAGCATCAATGCTCCATGTTTGGCAACATGGAACTCCATCATATCAGGTTATAGTTTATATGGACTTGAACACAAAGCTTTCAATGGTTTTTCTAAACTGCAAGAACAAGGGCTAGAACCGGACAAAATCACCTTCTTGGGTGTTTTAGCAGCATGCACCCATGGGGGCCTTGTCCATGTAGGAATGGAATACTTTCGAATGATGACAAAAGAGTATGGGTTGATGCCAAGTTTGCAGCATTATGCTTGCGTAGTTAGTCTCTTGGGTCGAGCAGGCTTGTTCAAGGAAGCAATTGAAATTATTAACAGAATGGAGATTCGGCCTGATTCTGCTGTCTGGGGTGCTTTGTTAAGTGCTTGTTGCATTCAACAAGAAGTTAAACTTGGGGAATGCTTGGCGAAAAAATTATTTTTATTGAATAACAAAAACGGTGGATTTTATGTATTAATGTCAAATCTTTATGCGATTGTTGGGAGGTGGGATGATGTAGCAAGGGTGAGGGGTATGATGAGAGAGAGTGGAGGAGATGGATGTTCAGGTGTTAGTGTTATTGAAGTGGCATCCGTCAAAGACACTAATAGCAACTTATGCCCGAGTGAAGTTAATTTGAATACAAACACTTGGCAGCATTTGTGTCCATACTGA 2148 0.4115 MKLASNPNPSSFHSLFQNARHALFIFRQLLEANANPNDVTFSLLIKACLSSSCGSSSTERLQVNQIQTQLLKRGINQFLYVNTALIDFYMKLGFSSHARQLFEDMAFRDVVSWNVLICGYSQNGHSYDALQLFVQMLRETFRPNQTTIVSLLPSCCRPELILQGRSIHGFGIKAGLGWDPQLKNALTSMYAKCDDLDASQLLFEERAERNVVSWNTMIGAYSQKGFLDKAMSCFKEMLKEGLQPSPVTMMNLMSANVVPETVHCYVVKCGFTSDASVVTSLVCLYAKQGYTDAAKLLYRHFPTKDLVSLTSIISSYSEKGDVESAVECFIETQHLDIKSDAVALISVLHGINNPSHFAIGSAFHSYGLKKGLTNDCLVANGLISMYSRFDEIETALSLFFDVSEKTLITWNSLISGCVQAGKSSDAMELFCQMNTCGQKPDAITIASLLSGCCQVGYLRIGETLHDYILRNNVKVEDFTGTALIDMYTKCGRLDYAEKVFCSINAPCLATWNSIISGYSLYGLEHKAFNGFSKLQEQGLEPDKITFLGVLAACTHGGLVHVGMEYFRMMTKEYGLMPSLQHYACVVSLLGRAGLFKEAIEIINRMEIRPDSAVWGALLSACCIQQEVKLGECLAKKLFLLNNKNGGFYVLMSNLYAIVGRWDDVARVRGMMRESGGDGCSGVSVIEVASVKDTNSNLCPSEVNLNTNTWQHLCPY* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1520 715 Gene3D Tetratricopeptide repeat domain 356 505 IPR011990 GO:0005515
Apr5g1520 715 Gene3D Tetratricopeptide repeat domain 14 170 IPR011990 GO:0005515
Apr5g1520 715 Gene3D Tetratricopeptide repeat domain 506 705 IPR011990 GO:0005515
Apr5g1520 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Apr5g1520 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Apr5g1520 715 Pfam PPR repeat family 407 454 IPR002885 -
Apr5g1520 715 Pfam PPR repeat family 209 253 IPR002885 -
Apr5g1520 715 Pfam PPR repeat family 108 157 IPR002885 -
Apr5g1520 715 Pfam PPR repeat 307 331 IPR002885 -
Apr5g1520 715 Pfam PPR repeat 380 401 IPR002885 -
Apr5g1520 715 Pfam PPR repeat 510 539 IPR002885 -
Apr5g1520 715 Pfam PPR repeat 481 501 IPR002885 -
Apr5g1520 715 Pfam PPR repeat 582 606 IPR002885 -
Apr5g1520 715 Pfam PPR repeat 83 105 IPR002885 -
Apr5g1520 715 PANTHER OS07G0578800 PROTEIN-RELATED 48 205 IPR045215 GO:0003723|GO:0009451
Apr5g1520 715 PANTHER OS07G0578800 PROTEIN-RELATED 302 714 IPR045215 GO:0003723|GO:0009451
Apr5g1520 715 PANTHER OS07G0578800 PROTEIN-RELATED 207 299 IPR045215 GO:0003723|GO:0009451
Apr5g1520 715 TIGRFAM PPR: pentatricopeptide repeat domain 111 144 IPR002885 -
Apr5g1520 715 TIGRFAM PPR: pentatricopeptide repeat domain 408 442 IPR002885 -
Apr5g1520 715 TIGRFAM PPR: pentatricopeptide repeat domain 212 245 IPR002885 -
Apr5g1520 715 Pfam E motif 626 686 IPR046848 -
Apr5g1520 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 143 IPR002885 -
Apr5g1520 715 Gene3D Tetratricopeptide repeat domain 262 355 IPR011990 GO:0005515
Apr5g1520 715 Gene3D Tetratricopeptide repeat domain 171 261 IPR011990 GO:0005515
Apr5g1520 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Apr5g1520 715 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 207 299 - -
Apr5g1520 715 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 48 205 - -
Apr5g1520 715 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 302 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1520 Apr-Chr5 19136883 19139030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1520 37 688 Glycoside Hydrolase AT3G49170 29.956 5.73e-100 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1520 - - gmx:100787089 1179.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1520 5 19136883 19139030 Apr5g1520 5 19136883 19139030 ECH