Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1484 ATGATCTCAATCTCTTCTTCTGAATTGAACTACTTAGTCTTCCGTTACCTTCACGAATCAGGTTTTACTCATTCTGCTTTTGCATTCGGGTATGAAGCAGGAATCGAGAACAGCAGAATTGATGTTAATGTGGTTCCACCGGGTGCTCTTGTTACTTTCATACAGAAAGGAATTCAATATCTTGAGCTGGAAGCAAACTTGAGTGGTCTACAGAGTGATGCTGACATGGATGAAGATTTATCATTTCTACAGCCGCTGGATCTTATCACAAAGGACCCATATGAACTACACAATATAGTAAAAGCCAAAAAGGAAAACCTACGTCAGCATAAATTCGAATCAAATATAATAATGAATGAATTGAGTCAGGACGACGGAAGGGAACGTGTTCAGGATACAGAGAAAGAGAGGAAAGAAAAGGAAAATGAACAAAGAATGGAAAAAATACGGTTAGAGAAAGAGACAGAGCAAGTGAAGGGTGAATATAAAGAAGCACAACACACCGATCAAAACCATACAGAGAATCATGAAGATAAGATTATTGTTGAAAATCTGGAAAATAGAGCGCATGGAGGGCCTGAACCAATGGAAATCTCACAGAGCTCCATGTCATTGCCTAATGAAACTCCATGTGCTGATGTAAAAATTTTGGAAGGCCATAAATCAGAGGTTTTTGCTTGTGCATGGAATCCATCAGGTCCACTTCTTGCGTCTGGATCTGGAGATTCAACAGCTCGAATTTGGAAAATTGCTGATGGACATTGTAGCTCTAGTGTGCAAAATGAATCAGTAAATGTTGTAGTGCTGCAGCACTTAAAAGAAAGCACCAATGAAGAAAGCAAGGATGTCACAACACTTGACTGGAATGGTGACGGAACTCTATTGGCAACTGGTTCTTATGATGGCCAAGCAAGAATATGGAGTAGAGATGGCGAGTTGAATAGTACACTAAACAAGCACAAAGGTCCAATCTTTTCTCTAAAGTGGAACAAGAAAGGGGATTATCTTCTTAGTGGAAGTGTAGACAAAACTGCTGTTGTATGGAACATAAAGACTGGGGAATGGAAACAACAATTTGAATTTCACTCTGGACCAACTCTTGATGTTGATTGGCGAAACAATGTTTCATTTGCAACATGCTCCACCGATAAAATGATATATGTTTGTAAAATTGGGGAGAATAGACCAATCAAAACTTTCTCAGGGCATCAGGATGAAGTTAATGCCATTAAATGGGATCCAACAGGTTCTTTACTGGCTTCCTGCTCAGATGATCACACTGCAAAAATATGGAGTTTAAAGCAGGACAAGCATTTACATGATTTAAAGGAACATGTCAAGGAGATATATACTATCCGATGGAGCCCTACAGGTCCAGGTACCAACAGTCCCAACCAGCAGTTAGTACTAGCAAGTGCCTCATTCGACTCCACAATAAAGCTATGGGATGTGGAACTAGGGAGTGTACTCTACAGCTTAAATGGCCACAGGGATCCTGTATATTCCGTTGCATTCAGCCCTAATGGCGAGTATCTGGCAAGTGGCTCCATGGATAGATACATGCATATATGGTCGGTGAAGGAGGGCAAGATTGTGAAAACATACGCGGGAAATGGTGGGATATTTGAAGTTAATTGGAGCAAAGACGGTGATAAAGTTGCTGCCTGTTTTTCAAACAATATAGTCTGTGTTTTGGATTTCCGAATGTAA 1710 0.4029 MISISSSELNYLVFRYLHESGFTHSAFAFGYEAGIENSRIDVNVVPPGALVTFIQKGIQYLELEANLSGLQSDADMDEDLSFLQPLDLITKDPYELHNIVKAKKENLRQHKFESNIIMNELSQDDGRERVQDTEKERKEKENEQRMEKIRLEKETEQVKGEYKEAQHTDQNHTENHEDKIIVENLENRAHGGPEPMEISQSSMSLPNETPCADVKILEGHKSEVFACAWNPSGPLLASGSGDSTARIWKIADGHCSSSVQNESVNVVVLQHLKESTNEESKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELNSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAVVWNIKTGEWKQQFEFHSGPTLDVDWRNNVSFATCSTDKMIYVCKIGENRPIKTFSGHQDEVNAIKWDPTGSLLASCSDDHTAKIWSLKQDKHLHDLKEHVKEIYTIRWSPTGPGTNSPNQQLVLASASFDSTIKLWDVELGSVLYSLNGHRDPVYSVAFSPNGEYLASGSMDRYMHIWSVKEGKIVKTYAGNGGIFEVNWSKDGDKVAACFSNNIVCVLDFRM* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1484 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 250 - -
Apr5g1484 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 400 434 - -
Apr5g1484 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 354 - -
Apr5g1484 569 Pfam WD domain, G-beta repeat 395 432 IPR001680 GO:0005515
Apr5g1484 569 Pfam WD domain, G-beta repeat 214 249 IPR001680 GO:0005515
Apr5g1484 569 Pfam WD domain, G-beta repeat 313 349 IPR001680 GO:0005515
Apr5g1484 569 Pfam WD domain, G-beta repeat 488 525 IPR001680 GO:0005515
Apr5g1484 569 Pfam WD domain, G-beta repeat 437 483 IPR001680 GO:0005515
Apr5g1484 569 Pfam WD domain, G-beta repeat 281 308 IPR001680 GO:0005515
Apr5g1484 569 CDD WD40 214 525 - -
Apr5g1484 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 442 492 IPR001680 GO:0005515
Apr5g1484 569 SMART WD40_4 528 566 IPR001680 GO:0005515
Apr5g1484 569 SMART WD40_4 435 483 IPR001680 GO:0005515
Apr5g1484 569 SMART WD40_4 486 525 IPR001680 GO:0005515
Apr5g1484 569 SMART WD40_4 352 390 IPR001680 GO:0005515
Apr5g1484 569 SMART WD40_4 393 432 IPR001680 GO:0005515
Apr5g1484 569 SMART WD40_4 265 308 IPR001680 GO:0005515
Apr5g1484 569 SMART WD40_4 310 349 IPR001680 GO:0005515
Apr5g1484 569 SMART WD40_4 210 249 IPR001680 GO:0005515
Apr5g1484 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 308 - -
Apr5g1484 569 MobiDBLite consensus disorder prediction 123 145 - -
Apr5g1484 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 258 IPR001680 GO:0005515
Apr5g1484 569 Pfam LisH 8 33 IPR006594 GO:0005515
Apr5g1484 569 PRINTS G protein beta WD-40 repeat signature 236 250 IPR020472 -
Apr5g1484 569 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Apr5g1484 569 PRINTS G protein beta WD-40 repeat signature 470 484 IPR020472 -
Apr5g1484 569 PANTHER WD40 REPEAT PROTEIN 4 569 IPR045183 GO:0003714|GO:0016575
Apr5g1484 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 493 530 - -
Apr5g1484 569 Coils Coil 123 168 - -
Apr5g1484 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 493 534 IPR001680 GO:0005515
Apr5g1484 569 SUPERFAMILY WD40 repeat-like 212 567 IPR036322 GO:0005515
Apr5g1484 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 358 IPR001680 GO:0005515
Apr5g1484 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 441 IPR001680 GO:0005515
Apr5g1484 569 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 4 569 - -
Apr5g1484 569 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Apr5g1484 569 ProSitePatterns Trp-Asp (WD) repeats signature. 336 350 IPR019775 -
Apr5g1484 569 Gene3D - 206 569 IPR015943 GO:0005515
Apr5g1484 569 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Apr5g1484 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 308 IPR001680 GO:0005515
Apr5g1484 569 Gene3D - 2 92 - -
Apr5g1484 569 SMART Lish 5 37 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1484 Apr-Chr5 18817507 18822581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1484 295 568 Acyl Lipid Metabolism Gene Families AT3G18860 29.412 9.41e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1484 K04508 - gmx:100783690 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1484 5 18817507 18822581 Apr5g1484 5 18817507 18822581 ECH