Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1480 ATGTACCCCACACGGTGGCGACGGCTACCTCCTCCTCCGCCGTCTCAGGCTCAGCGGTCGCAACACACTTGGACCCACATACTATCTCCTCTCACCATTTGGATTTGTGGCATACTCCGTTATGGGTATTACGGGGATTCTCGTATCCTTCTTGGGCCTGCTTCGTCGCGTTTGTTGAAGGCCAACTCTGTTTTTGTGAAGCGGATTCATGTATCAAATGAGGACAGTAATAATCAAGTTATTCTTCATGCCTTCAAAAAGAAGCCCCAGTTAAGCTCCGAAACTAATTGGACAACGTTGAATTTCTTCAATATTGCAGCGTATAGAAAAAAGGGGATTTCTTTGTGGTTAAATAAGGGCTCCACCATCCACATTAGGTGGGAATCACAAACTAATAGTAGTTTGAATCAGCTACATGGGATGGTGATCCAAGGAGAAAATAAATTTGAACGACTACAGCCTAAGCCAACGAGCTTCCCCAATGAAACTAATGGTAAAGAAGCTGAATACATAGTCGAAGAAGATGATAGATACCACATAGGGGTTCTAAACTTGAATGCCAGGAACATAATCTTGACTATGAATGTTAATGTTTCGGCGAAGGTATATGATACCACCACAGCTGAGAAAATGTGCTCTAGTGAAAATGGATCTTGCAGCCTCAGTTTTCCCTTCCCTAACACTCAATATGTTACTCTTACGGCAACTAACAATGGACCGTATGCTGAAATTTTTTTCGTGGTTCGTGTGTTGGCTTACATATTACTTTTAGGATTTATTATGATTGTTGTTTATCTGATTATGAAATTCCTTGGAGTCTATGATGGTAGTGATCAGAATAATTATGTGATAGTGGATACAAACAGAACAAGTAATCTTGTTGCAACACAAACCGAAACTGAGCCGTTGATGCGAGTGGAGTCAACTCGATTGACATATGGAACAAATGCAGAAGATGATGAAGATTCAGGAGCATCCAGTAGCTCTTCAGAGGAGTTATATGATGAAAAATTATGTGTCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACATTGTGCTACTTGCTATGACTGTGCACAGAGGTACACATGCCCAAGATTTTCATATGCTTTACCTACGTGCATGATTGTCAATGAGGAGAACAAACTGTGTCCTATATGTCGAAAGCTTATTCACAAAGTACGAAGATTATTTCATAATTAG 1218 0.4056 MYPTRWRRLPPPPPSQAQRSQHTWTHILSPLTIWICGILRYGYYGDSRILLGPASSRLLKANSVFVKRIHVSNEDSNNQVILHAFKKKPQLSSETNWTTLNFFNIAAYRKKGISLWLNKGSTIHIRWESQTNSSLNQLHGMVIQGENKFERLQPKPTSFPNETNGKEAEYIVEEDDRYHIGVLNLNARNIILTMNVNVSAKVYDTTTAEKMCSSENGSCSLSFPFPNTQYVTLTATNNGPYAEIFFVVRVLAYILLLGFIMIVVYLIMKFLGVYDGSDQNNYVIVDTNRTSNLVATQTETEPLMRVESTRLTYGTNAEDDEDSGASSSSSEELYDEKLCVICYDEQRNSFFVPCGHCATCYDCAQRYTCPRFSYALPTCMIVNEENKLCPICRKLIHKVRRLFHN* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1480 405 PANTHER OS05G0521000 PROTEIN 18 404 IPR044586 GO:0004842
Apr5g1480 405 Pfam Zinc finger, C3HC4 type (RING finger) 336 399 - -
Apr5g1480 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 404 IPR013083 -
Apr5g1480 405 Pfam Domain of unknown function (DUF4792) 81 149 IPR032008 -
Apr5g1480 405 Pfam Domain of unknown function (DUF4793) 168 266 IPR032010 -
Apr5g1480 405 MobiDBLite consensus disorder prediction 1 21 - -
Apr5g1480 405 MobiDBLite consensus disorder prediction 1 17 - -
Apr5g1480 405 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 404 - -
Apr5g1480 405 ProSiteProfiles Zinc finger RING-type profile. 339 393 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1480 - - gmx:100794488 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1480 5 18800529 18802552 Apr5g1480 5 18800529 18802552 ECH