Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1478 ATGTCAAAACGATCATCTCTGTTTAACGATGATGGGTCTAGTTTTTTGTCGTCTGAATCGTCATGCTTATCTCAGTTCTTGTTGCGAAGCCAAAACCCCTATCACGTGAATCAAACCCTAGAAGATGCTTTTGCTGGTCTTTCTGTCTCTGCGTCTTCTTTTAATCACCCACCTCTTGATCTTCTTGGCCCTGGGTCTTCTTCTGGTGTTAATGGCAACGCTAAGATTCTCTCTCGCTTTAGTTATGAAAGTGGGACTCTTGTAACCCCTCAAAGTTCCGATCTGTACCCTTCTTCTTTTCCCACGTTCAGCGCCAACGTTTTCTCTTCAAGCTACGATCATGGGTTTCTTGATTCGGAGCCACTGGCGAGACAGAGAGAATTTGGTAACGTTTATCCCACTGTGCCACTTTCGAACGGGGTGCAACAAAAACCCTTAGGTAGTAATTTATTGAACGATTGCTGGGGTAACAGGTCGAGTGGTCCGAGGTTTAATGTCGATGAAAGGCGCTTGCAATGGTTCAATGATTTTAGGGGGAGGGTTCTGTTATTGGCTATGGATCAACATGAATGTAGGACTTTGCAGGAAACACTGAAAATATTGAAAAGAGAGGAGCTTTCTATCATCTTCTCGGAGCTGATAAATCATGTGGTTGAGTTGATAGTTGATCCCTTTGGGAATTATGTTGTTCAGAGGATGGTGGAAATCTGCAGTAAAGAACAACGAACTCAGATCATTTTAATGTTGACTCAGTCTAATCTTCAGTTAGTCAGAATATGTCTTACCCCCCATGGAGCCCGCACTGTTGAGAAGTTATTGGCGCATGTTACCACCCAGGAGCAACGAGGTCTGATTATGTCAGTTTTAAGCCCCAGTGCTGCTGTATTGGCTAAGGATATGAATGGTCATCGTGTGCTTCTGCATTGTCTAAAACATTTCTCAGAAGAAGATACTAAGCATCTTCTGAATGTGGTGGCAATCAAGTGTTTTGGGATTGCAACAGATAAGACTGGGTGTTGTGTGCTGCAGCAATGTGTTAACCATGCTCAGGGAGAAACAAAAAGGCAGCTGATTGCTGCCATCATAAGAAATGCTGCACTCCTAGCAGAAGACTCTTATGGCAACTATGTTGTGCAGCATTTGTTGTCTCAAAAAATACCAGGAGTTGTAGAAAGTCTTATGAGACAGCTTGAACAAAATTTTTTCCATCTTGCCTGCAACAAATATGGGAGTAATGTAGTGGAGAAGTTCTTTCACGAATCAGGGGAACAACATTCATCACTTATTATTTTGGAGTTGCTCCACAATCCAAATGTTGCTATGCTTCTTGTTGATCCATACGGAAATTATGTCATCAAATCAGCACTGTCTGCGTCCAGGGGTGCTCTTCGAGATGCTTTAGAGAACCTGATCCAACTAAATTCCATGATGATGTGTAGTAACCTCTATGGCAAAAAATTACTTGGTTGTCAGGTTGTGTTTGTTTGTAGTTTGTGTTAG 1500 0.4233 MSKRSSLFNDDGSSFLSSESSCLSQFLLRSQNPYHVNQTLEDAFAGLSVSASSFNHPPLDLLGPGSSSGVNGNAKILSRFSYESGTLVTPQSSDLYPSSFPTFSANVFSSSYDHGFLDSEPLARQREFGNVYPTVPLSNGVQQKPLGSNLLNDCWGNRSSGPRFNVDERRLQWFNDFRGRVLLLAMDQHECRTLQETLKILKREELSIIFSELINHVVELIVDPFGNYVVQRMVEICSKEQRTQIILMLTQSNLQLVRICLTPHGARTVEKLLAHVTTQEQRGLIMSVLSPSAAVLAKDMNGHRVLLHCLKHFSEEDTKHLLNVVAIKCFGIATDKTGCCVLQQCVNHAQGETKRQLIAAIIRNAALLAEDSYGNYVVQHLLSQKIPGVVESLMRQLEQNFFHLACNKYGSNVVEKFFHESGEQHSSLIILELLHNPNVAMLLVDPYGNYVIKSALSASRGALRDALENLIQLNSMMMCSNLYGKKLLGCQVVFVCSLC* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1478 499 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 114 488 - -
Apr5g1478 499 ProSiteProfiles Pumilio RNA-binding repeat profile. 396 432 IPR001313 GO:0003723
Apr5g1478 499 PANTHER PUMILIO HOMOLOG 15 114 488 - -
Apr5g1478 499 Gene3D - 163 492 IPR011989 -
Apr5g1478 499 SMART pum_5 212 247 IPR001313 GO:0003723
Apr5g1478 499 SMART pum_5 396 431 IPR001313 GO:0003723
Apr5g1478 499 SMART pum_5 324 359 IPR001313 GO:0003723
Apr5g1478 499 SMART pum_5 360 395 IPR001313 GO:0003723
Apr5g1478 499 SMART pum_5 251 287 IPR001313 GO:0003723
Apr5g1478 499 SMART pum_5 176 211 IPR001313 GO:0003723
Apr5g1478 499 SMART pum_5 288 323 IPR001313 GO:0003723
Apr5g1478 499 SMART pum_5 434 469 IPR001313 GO:0003723
Apr5g1478 499 ProSiteProfiles Pumilio RNA-binding repeat profile. 176 211 IPR001313 GO:0003723
Apr5g1478 499 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 146 495 IPR033133 GO:0003723
Apr5g1478 499 Pfam Pumilio-family RNA binding repeat 296 325 IPR001313 GO:0003723
Apr5g1478 499 Pfam Pumilio-family RNA binding repeat 329 362 IPR001313 GO:0003723
Apr5g1478 499 Pfam Pumilio-family RNA binding repeat 216 246 IPR001313 GO:0003723
Apr5g1478 499 Pfam Pumilio-family RNA binding repeat 180 214 IPR001313 GO:0003723
Apr5g1478 499 Pfam Pumilio-family RNA binding repeat 438 458 IPR001313 GO:0003723
Apr5g1478 499 Pfam Pumilio-family RNA binding repeat 255 289 IPR001313 GO:0003723
Apr5g1478 499 Pfam Pumilio-family RNA binding repeat 367 382 IPR001313 GO:0003723
Apr5g1478 499 Pfam Pumilio-family RNA binding repeat 400 434 IPR001313 GO:0003723
Apr5g1478 499 SUPERFAMILY ARM repeat 173 488 IPR016024 -
Apr5g1478 499 ProSiteProfiles Pumilio RNA-binding repeat profile. 360 395 IPR001313 GO:0003723
Apr5g1478 499 ProSiteProfiles Pumilio RNA-binding repeat profile. 212 247 IPR001313 GO:0003723
Apr5g1478 499 Coils Coil 184 204 - -
Apr5g1478 499 ProSiteProfiles Pumilio RNA-binding repeat profile. 433 472 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1478 Apr-Chr5 18787795 18790712 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1478 - - gmx:100795545 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1478 5 18787795 18790712 Apr5g1478 5 18787795 18790712 ECH