Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1470 ATGGACCCATCTATAGTGAAGCTTCTTGAAGATGACGAGGATGAAACTATGCACTCAGGGGCCGATGTGGAAGCATTCCAGGCTGCATTAAATAGAGACATAGGAGGAGATGCTTCTACTTCTCAGCTTTCTGGTTCAGACACAGGGTCAGGCTGCATACATCTTACTCTCCTTAGACTCAGCCAGGACAACCAAACTGACTGCCAAAATCAAGAACCTAAAAGTGCACAGCAGCAAGAGCAACATTCATCTGAAATGGAGCTAAAGGAACAAGGACCTCTTGTGGAACAGCTACAGAATGTTGCTTCGCAGGATGCAAATAATCTCCCTTCATCTCAGAAACAATCTCAAGATGAATCTCTCCAAGGTCATAATGTACAAGTTTCTAACCAAAATTCACGAACAATTGGAGTTCAGAACTCTGAAAAAGATCCTGTCTTTAACCAAGAGGCAGTTAACACGCATAATCCCAACCATGAATCGCAGTATGCAAAACTGCAGCAGATGAGTAATCAACAGGCCACAGTGAATGAGCAGCCTAGCAGCCAGATCAATCGGAATAAACAGGTACCATTTGGCCTGTTGCTCCCTATATTGATTCCCCAGCTTGCCAAAGACAGGGCCATGCAACTTCAAACTTTATTTAATAAATTGAAGAAAGATGAAATACCCAAAGATCATTTTGTGCGCCTTATGAAAGGTATTGTAGGGGATCAGATGCTTAGATTGGCATTATCGCAAGTGCAATTACAGCCAAGATCAAACTCAGGGCCTACTGGGCAGCAGCATCCTGTAAGGATGCCAAATGTTAATTCAGGTGCACCAAAATTTAATGATCCCCATGCATTAGCACAGCTGCATCAGAGAAGTACTAATGCTGCTGCTGCTGCAGACCAATCTCATAATACTTCTACAACTGTCCAAGCGAAGAATGAATCTCAAGTAGAACCTCAAGGAGTGCAACCAAACCAATTACCACCATCCAGTTCTAATGCTGTTGGTCAAGAAACTGAAAGATCCTCACTTCACATACAAGGCCTTAACAAGCAGCAGCAACAGCATCTACATTTCCCTTCAGCATATGGTAGTAGTGGCAGTAATTACAAACCTTTTTCAGGCTCAGCCAGTAATTCCACATCTTCTCTCAGACCACAACCTCATGATTCACAAATGAGGCAAATTCCACATCAGAGCATTGGTCCAAATCAATTAGGTGGGGCAACTCAGGGTTTGATTGGTATGGTAAAACTTGAACAGCAAAATTCTTTCAATGATCCGAAGAGAATGCCAGGTGGATCTGTGTCACCTGTGGTAAGCAATAGTGTGTCACAGCAACCTTCAAATTCTTGGCAACCATCAGCACACAAAGAACAAAATTCAGGCTCATTTTCATCAGTTTCATATGTTAAAAAGGAACCTAATGACCTTTTTTCTACTGAGCATCAACATAGGCATAATTTGTCTAAATTGCATGGGTTGCATTCTGTTAATTCTGCACAAATTGAACAGGGTAGTAGTGCCAATCAAGGCACCCTAAAGGAGGATTTTTCAAGAGGCCTTCCAGCATCCACAAATATGCCACATTCAACATCTGCTAGCTTGCTGCCGCTCAATTCTGCTTCCCCTTCTGTATCTCAACTTGACCCGGGTGTCACTTTAAGCTCTCAGATTCCATCAAACACTTCTGGCATAAATGCAAGAACACCTCTGAAAAAGCCTTCTCCAGGCCAGAAGAAACCACTTGATGCACTTGGTTCTTCACCTCCACCTCCAAGTAAGAAACAAAAAGTGTCTGGGGCATCTTTGGAGCAAAGCATTGAACAACTTAATGATGTTACTGCTGTTAGTGGAGTTGATCTTAGGGAGGAGGAAGAACAATTATTTTCTGGGCCCAAGGAGGACAGTCGAGCTTCAGAAGCATCTCGAAGAGTTGTGCAAGAAGAAGAGGAAACTCTGATTTTGCAGAAGGCTCCATTGCAGAGAAAAATGATTGAGATTATAACTGAATGTGGCTTGAAGGGTATGGGTAATGATTTGGAGAGATGCTTGTCACTGTGTGTGGAGGAAAGAATGCGTGGAATAATAAGTAACATGATTAGGATGTCAAAACAGCGGGTTGATTTTGAGAAGACAAGACATCAGACTGTTGTCACCTCAGATGTTCGACAGCAAATCATGACAATGAATAGGAAAGCAAGGGAAGAGTGGGAGAAAAAACAGGCAGAAACTGAGAAGCTCCGGAAACTGAATGATGTAGAAGGTAATACTGGAATTGATGGTGACAAAGAGAAGGATGAGGGACGAACTAAATCAACAAAGGTGAACAAAGAAGTGGATGACAAGATGAGGACAAATGCGGCAAATGTTGCTGCCCGAGCTGCTGTTGGGGGAGATGACATGCTGTCCAAGTGGCAGCTTATGGCTGAGCAAGCCAGACAGAAACGTGAAGGGGGTATTGATACTTCATCTGGTTCTCAGCCAGCTAAAGATGTGAGTCGCAAATCTTCATCAACATCAGGAAGGAGTACAAAAGACAATCATGCAAAGGAGAAAAAAGGGGCTGCTAGAAAATTTGGGAGAAATCATGTCACCGCACCTCAATCTAGTGTAGCTCGAAGCATCTCTGTGAAGGACGTGATTGCGGTCTTGGAGAGGGAACCTCAGATGTCCAAATCATCACTCATTTATCGATTATATGAGAGGATTCATTCTTACACCTCAACTGAATAA 2730 0.4297 MDPSIVKLLEDDEDETMHSGADVEAFQAALNRDIGGDASTSQLSGSDTGSGCIHLTLLRLSQDNQTDCQNQEPKSAQQQEQHSSEMELKEQGPLVEQLQNVASQDANNLPSSQKQSQDESLQGHNVQVSNQNSRTIGVQNSEKDPVFNQEAVNTHNPNHESQYAKLQQMSNQQATVNEQPSSQINRNKQVPFGLLLPILIPQLAKDRAMQLQTLFNKLKKDEIPKDHFVRLMKGIVGDQMLRLALSQVQLQPRSNSGPTGQQHPVRMPNVNSGAPKFNDPHALAQLHQRSTNAAAAADQSHNTSTTVQAKNESQVEPQGVQPNQLPPSSSNAVGQETERSSLHIQGLNKQQQQHLHFPSAYGSSGSNYKPFSGSASNSTSSLRPQPHDSQMRQIPHQSIGPNQLGGATQGLIGMVKLEQQNSFNDPKRMPGGSVSPVVSNSVSQQPSNSWQPSAHKEQNSGSFSSVSYVKKEPNDLFSTEHQHRHNLSKLHGLHSVNSAQIEQGSSANQGTLKEDFSRGLPASTNMPHSTSASLLPLNSASPSVSQLDPGVTLSSQIPSNTSGINARTPLKKPSPGQKKPLDALGSSPPPPSKKQKVSGASLEQSIEQLNDVTAVSGVDLREEEEQLFSGPKEDSRASEASRRVVQEEEETLILQKAPLQRKMIEIITECGLKGMGNDLERCLSLCVEERMRGIISNMIRMSKQRVDFEKTRHQTVVTSDVRQQIMTMNRKAREEWEKKQAETEKLRKLNDVEGNTGIDGDKEKDEGRTKSTKVNKEVDDKMRTNAANVAARAAVGGDDMLSKWQLMAEQARQKREGGIDTSSGSQPAKDVSRKSSSTSGRSTKDNHAKEKKGAARKFGRNHVTAPQSSVARSISVKDVIAVLEREPQMSKSSLIYRLYERIHSYTSTE* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1470 909 PANTHER IP01149P-RELATED 349 903 - -
Apr5g1470 909 PANTHER IP01149P-RELATED 40 335 - -
Apr5g1470 909 MobiDBLite consensus disorder prediction 250 407 - -
Apr5g1470 909 MobiDBLite consensus disorder prediction 284 405 - -
Apr5g1470 909 CDD TAF4 604 897 IPR007900 GO:0005669|GO:0006352
Apr5g1470 909 Coils Coil 729 749 - -
Apr5g1470 909 Gene3D Histone, subunit A 654 699 IPR009072 GO:0046982
Apr5g1470 909 MobiDBLite consensus disorder prediction 105 134 - -
Apr5g1470 909 ProSiteProfiles RST domain profile. 183 254 IPR022003 -
Apr5g1470 909 MobiDBLite consensus disorder prediction 522 568 - -
Apr5g1470 909 MobiDBLite consensus disorder prediction 65 82 - -
Apr5g1470 909 MobiDBLite consensus disorder prediction 732 783 - -
Apr5g1470 909 MobiDBLite consensus disorder prediction 623 643 - -
Apr5g1470 909 Pfam Transcription initiation factor TFIID component TAF4 family 609 898 IPR007900 GO:0005669|GO:0006352
Apr5g1470 909 Pfam RCD1-SRO-TAF4 (RST) plant domain 186 249 IPR022003 -
Apr5g1470 909 MobiDBLite consensus disorder prediction 504 601 - -
Apr5g1470 909 MobiDBLite consensus disorder prediction 250 268 - -
Apr5g1470 909 MobiDBLite consensus disorder prediction 422 466 - -
Apr5g1470 909 MobiDBLite consensus disorder prediction 817 842 - -
Apr5g1470 909 MobiDBLite consensus disorder prediction 809 871 - -
Apr5g1470 909 MobiDBLite consensus disorder prediction 65 91 - -
Apr5g1470 909 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 349 903 IPR045144 GO:0005669|GO:0006352
Apr5g1470 909 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 40 335 IPR045144 GO:0005669|GO:0006352
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1470 Apr-Chr5 18728131 18736872 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1470 K03129 - gmx:100797127 1438.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1470 5 18728131 18736872 Apr5g1470 5 18728131 18736872 ECH