Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1457 ATGTGGAAGCAGATCAGAGACAGAGAAGCTGGGAAATTACGTGCACATTGTTTCGCGAATCGCGTGAAGTCCAATCGCATTTCCCAACTTCAATTATCAAATCACAAAGACATCGTTTCCCCTCACAAAGGCTCCATCAACTGTCTTCAGATTGATTCGACAGAGGGAAGATATTTGTTATCTGCCGCATCCGATGCCTCCGTTGCCGTTTACGACGTTCAACGACCCACAGTTTCGGAAGCAGGTGGTGTGATATCGAAACACAGGTCCATATTCGTCGTTGATAAGCAGCACCAAACGCCTCACAAGTATGCCGTATCATCAGCTATATGGTATCCAATTGACACGGGATTGTTCATCACTGGCTCCTATGATCATCATATTAATGTTTGGGACACTAACACCACGCAGGTGGTGGTGAATTTCAAAATGCCTGGGAAAGTTTATCGGACTGCCATATCCAATTTGTCAACGTCTCACATGCTTGTCGCTGCTGGCACTGAGGATGTTCAAGTTCGCCTTTGTGATATTGCTTCCGGGGCATTCACTCACACTTTGTCCGGTCACCGCGATGGAGTAATGACTGTTGAATGGTCTACTTCAAGTGAATGGGTCTTAGTTACTGGGGGATGTGATGGTGCAATACGTTTTTGGGACATCAGGCGCGCCGGATGTTTCCTAGTTTTAAATCAATCCCAAACTCAGCTTGGAAGACGCCCACCTATACTCAAATGCTCCATGATAACTAAGCTTCATCGCTCACAGGATTCAAGTACAAAATTACGTGCTGCACAAAAGAAGCATGCCAATGGAAGTGGTAGCAGACAACTACCAATTGGCAGAGTTCCATCCAAGGGACCAGTGAAGCAGAGGTTACATCCAGGAATGCTGTCTACGCAGGATCGTGCAACTGCTCATTATGGTGCTGTGACAGGATTAAAAGCAACAGATGATGGCATGTATCTACTAAGTGCAGGGTCTGATTCAAGATTGAGGTTGTGGGATATTGAATCTGGCTGTGATACTCTTGTGAACTTTGAAACAGTCCGCCTGCAAATAAACAAACCTATCCAATTAGCCACCACTCAAGATTCGGCCTTTGTTTTCGTTCCATGCATGAGAGCTGTGAAAGCATTTGACATGTGGTCTGGGAACACAGACGCTATATTGCGTGGCCACTATGAATGTGTGAATTCTTGCTGGTTTAATCAACAAGATCAGGAATTGTACACTGGTGGAAACGATAGACAAATTCTTGTCTGGTCACCTGCTAGATCAATCGTTGATGAAATGGATGAAGGACCTGCTGATGATCAGGATAGCTGGAGCAACTGA 1335 0.4532 MWKQIRDREAGKLRAHCFANRVKSNRISQLQLSNHKDIVSPHKGSINCLQIDSTEGRYLLSAASDASVAVYDVQRPTVSEAGGVISKHRSIFVVDKQHQTPHKYAVSSAIWYPIDTGLFITGSYDHHINVWDTNTTQVVVNFKMPGKVYRTAISNLSTSHMLVAAGTEDVQVRLCDIASGAFTHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLNQSQTQLGRRPPILKCSMITKLHRSQDSSTKLRAAQKKHANGSGSRQLPIGRVPSKGPVKQRLHPGMLSTQDRATAHYGAVTGLKATDDGMYLLSAGSDSRLRLWDIESGCDTLVNFETVRLQINKPIQLATTQDSAFVFVPCMRAVKAFDMWSGNTDAILRGHYECVNSCWFNQQDQELYTGGNDRQILVWSPARSIVDEMDEGPADDQDSWSN* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1457 444 ProSitePatterns Trp-Asp (WD) repeats signature. 206 220 IPR019775 -
Apr5g1457 444 Gene3D - 1 425 IPR015943 GO:0005515
Apr5g1457 444 PRINTS G protein beta WD-40 repeat signature 119 133 IPR020472 -
Apr5g1457 444 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Apr5g1457 444 PRINTS G protein beta WD-40 repeat signature 322 336 IPR020472 -
Apr5g1457 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 339 - -
Apr5g1457 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 344 IPR001680 GO:0005515
Apr5g1457 444 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 1 443 IPR042238 GO:0006283
Apr5g1457 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 99 141 IPR001680 GO:0005515
Apr5g1457 444 MobiDBLite consensus disorder prediction 266 292 - -
Apr5g1457 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 422 - -
Apr5g1457 444 SUPERFAMILY WD40 repeat-like 39 424 IPR036322 GO:0005515
Apr5g1457 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 221 IPR001680 GO:0005515
Apr5g1457 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 221 - -
Apr5g1457 444 Pfam WD domain, G-beta repeat 304 335 IPR001680 GO:0005515
Apr5g1457 444 Pfam WD domain, G-beta repeat 388 422 IPR001680 GO:0005515
Apr5g1457 444 Pfam WD domain, G-beta repeat 182 219 IPR001680 GO:0005515
Apr5g1457 444 Pfam WD domain, G-beta repeat 114 132 IPR001680 GO:0005515
Apr5g1457 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 39 81 IPR001680 GO:0005515
Apr5g1457 444 SMART WD40_4 293 335 IPR001680 GO:0005515
Apr5g1457 444 SMART WD40_4 32 72 IPR001680 GO:0005515
Apr5g1457 444 SMART WD40_4 383 422 IPR001680 GO:0005515
Apr5g1457 444 SMART WD40_4 87 132 IPR001680 GO:0005515
Apr5g1457 444 SMART WD40_4 179 219 IPR001680 GO:0005515
Apr5g1457 444 ProSitePatterns Trp-Asp (WD) repeats signature. 322 336 IPR019775 -
Apr5g1457 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 422 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1457 158 339 Miscellaneous Gene Families AT5G08390 25.275 1.35e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1457 K10570 - gmx:100790433 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1457 5 18628136 18631639 Apr5g1457 5 18628136 18631639 ECH