Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1428 ATGATTCGAAGGACTCTGTGCTTTCCCAGTTTAAGGAATTTGCTTCTTCGAGCTGCTTGTGCGTCTTCTTCGTCTAAGCAGATCGGAGCTTACAATTGCTATGCATCTCAGTCCTCCCCTCTTCACGTCCCCAACCCAACTTACAGTGATGACGAGTATGCTGACGTGGACTGGGATAATCTTGGTTTTGGACTCATGCCTACTGATTACATGTACATTACAAAATGTAGAATGGGCCAAACTTTTGGAGAAGGACAACTCAGTCGTTATTGTAACATTGAACTTAGTCCATCAGCTGGAGTCCTAAACTATGGTCAGGGATTATTCGAAGGCACGAAAGCATACAGAAAAGAAAATGGGCAGATACTGCTGTTCCGTCCAGAAGAAAATGGCATCCGCATGAAGATTGGTGCGGAAAGAATGTGCATGACATCCCCTTCCATTGACCAATTTGTTGATGCTTTGAAGCAAACTGTCTTGGCAAACAAGCGATGGCAGGTTCCTCCACCGGGCAAAGGATCGTTGTACCTTAGGCCTTTGCTCATTGGGACTGGTCCAGTTTTGGGTTTGGCTCCTGCACCTGAATGCACCTTCCTCATATATGCTTCCCCTGTGCGCAACTATTTCAAGGAAGGTTCGGCTCCCCTCAACTTGTATGTGGAGGAAAACTTTGACCGTGCTTCTCGCCGCGGTACTGGAAGCGTTAAAACCATTTCCAATTATGCCCCGGTCTTGATGGCACAAATTAAAGCCAAGAAAAGAGGATTTTCGGATGTGCTATACCTTGATTCCCTCACCAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATCTTTATTGCCAAGGGCAAATGCATCTCAACACCTGCTACCAATGGAACTATTCTTTCCGGAATTACCAGAAAAAGCTTAATTGAAATTGCTCGTGATCTTGGCTACCAGGTTGAGGAGCGTGCTGTAGCCGTGGATGAACTGATTGAGGCTGATGAAGTTTTCTGCACAGGAACTGCGGTTGGTGTTGCTCCCGTGGGGAGTATCACATACCAGCATAAAAGGATGGAATATAAAACAGGTTCTGGAACCATTAGTGAAGAGCTGTACAGTACTATTTCGGGAATTCAAACGGGTATTATTGAAGATAAGAAGGGATGGATCGTTGAAATAGACTAA 1170 0.4513 MIRRTLCFPSLRNLLLRAACASSSSKQIGAYNCYASQSSPLHVPNPTYSDDEYADVDWDNLGFGLMPTDYMYITKCRMGQTFGEGQLSRYCNIELSPSAGVLNYGQGLFEGTKAYRKENGQILLFRPEENGIRMKIGAERMCMTSPSIDQFVDALKQTVLANKRWQVPPPGKGSLYLRPLLIGTGPVLGLAPAPECTFLIYASPVRNYFKEGSAPLNLYVEENFDRASRRGTGSVKTISNYAPVLMAQIKAKKRGFSDVLYLDSLTKKNLEEVSSCNIFIAKGKCISTPATNGTILSGITRKSLIEIARDLGYQVEERAVAVDELIEADEVFCTGTAVGVAPVGSITYQHKRMEYKTGSGTISEELYSTISGIQTGIIEDKKGWIVEID* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1428 389 Gene3D - 35 216 IPR043131 -
Apr5g1428 389 Pfam Amino-transferase class IV 107 346 IPR001544 GO:0003824
Apr5g1428 389 PANTHER AMINO ACID AMINOTRANSFERASE 10 389 IPR005786 GO:0004084|GO:0009081
Apr5g1428 389 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 10 389 - -
Apr5g1428 389 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 84 388 IPR005786 GO:0004084|GO:0009081
Apr5g1428 389 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 46 385 IPR036038 GO:0003824
Apr5g1428 389 ProSitePatterns Aminotransferases class-IV signature. 272 301 IPR018300 GO:0003824
Apr5g1428 389 CDD BCAT_beta_family 94 376 IPR033939 GO:0004084|GO:0009081
Apr5g1428 389 PIRSF BCAT1 35 389 IPR005786 GO:0004084|GO:0009081
Apr5g1428 389 Gene3D - 217 388 IPR043132 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1428 Apr-Chr5 18349294 18357355 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1428 K00826 - gmx:100782644 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1428 5 18349294 18357355 Apr5g1428 5 18349294 18357355 ECH