Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1413 ATGGCGGAAGAAGCACAGTACTCATCAGGAACCGACTCTGCGCCCCTTAAGCGCAAGTATGAAGACCAATCCACCCACAGGCCCACCGGTTTCTCCGCCCCTCTCTCTCCTCCTTCACCTGCCACCGGCATCGAACTCGCCAAACAGCGTGCTCAAGAAGTCGCCGCTCGCCTCCTCAGTGGTGCTCCTCCTCTCGACGCTAAACGCCCCAAACCCGACAACGGTGCCCCTCCCACCGGCTTCGATTCCCTTGATGCAAAGCCTCAGTATTCAGCTCCTTCTGCTGCTCCTGTCTCTTATGGGCATCAAGGTACGAGCAAGAAGATAGACATACCTAATGGTAGGGTGGGTGTTATCATTGGCAAAGGTGGAGACACTATTAAGTATCTGCAGTTGCAGTCTGGGGCTAAAATCCAGGTTACACGTGATATGGACGCTGACCCTAATTCTTCGACTAGGATGGTTGAGCTTATGGGTACTCCTGAGGCTATTGCCTCTGCTGAGAAGCTCATCAACGAAGTTCTTGCTGAGGCTGAAGCTGGGGGTTCGGGCATTGTTGCACGAAGATTGACTGGGCAAGCTGGGTCTGATGAATTTGTTATGAAAATCCCAAATAATAAGGTTGGCCTTATAATTGGTAAAGGAGGAGAAACAATAAAGAATATGCAAGGTTCAACTGGAGCAAGAATTCAGGTGATACCTCTGCATCTCCCCCCAGGTGACACGTCAACAGAAAGAACAGTAAAAATTGATGGGACTCCGGAGCAGATTGAATCTGCAAAGCAGTTGGTTAATCAAGTCATCAGTGGTGAGAATCGTCTTAGAAATCCAGCAATGTCTGGTGGATATCCTCAGCAAGGTTACCAATCTCGACCACCCTCTAACTGGGCTCCGCCTGTTGCTCCAATGCAACAACCTGGTTATGGCTATGTGCAACCTGGAGCATACACTGGTCCATCACCCCAGTACAACATGCCTCAGCCACCATACACAGGCTATCCTCCCCAGCAATCTGGTGGATATTCCACAAGTTGGGACCAGTCCACTGCAGCACCACACCAGCAGTCTACTCATTCTGGTGGTTATGATTACTATAGTCAACAGGCACAGCAACCACAAAATCCTGGGGGTCCTGCCCCTTCAGCTGATGGGTCCACGTACAATTACAGTCAACAGCCTTCCTCTGGTTATAATCAACAGGGACAGGGTTATGCTCAGGATGGGTATAATGGATATAATGCACCATCCCAATCAGGGTATGGACAGCCACCGTCATATGATCAGCAGCAAGGCTATGGCTCAGCTACTGGATATGGTAGTGGGAGTAACCCAGCACAAGAGGGCCACACTGCTAACTATGCATCGCAGGGAGATTCAGCTCAAGCTCCATCCGTCCCACCGTCTACCATTGCACAGCAAGGTTATCCTACCAGCCAACAGCCAAGCTCAAACAATGCCAACTATCCACCTCAAGGAACTCCTCAGTCAGGTTATGGGATACCCCCTACCTCCCAAGCAGCTTATGGCAATCAACCACAGTCTGGTTATGGATCTGGTTATGGACCCCCTCAATCTCAAAAGCCAGCTGGCAATCCACCTGTTTATGGACAGTCACAGTCTCCCAGCACAGCAGGAGGCTATGGTCAATCAGCATATCCTGCCCAGCCTCCACCTTCTGGGTATGCTCAACTGGAATCTGGCCCTCAAAGAGCCCCACCATCTGGTTTTGGTGGTGCAGTGCAACCAGGGTATGGTCCTCAATCATATGGTACTCCTCAGGGTGGTCAGCCTGGTTATGGTCAGGCACCACCTCCATATGGTAACAATTCTTATGGTGCTGGTTATACTCAGACTCCGGCATATACTAGTGATAGTAATGCCGGTGGAAATAGTCGTGGAAGCTATGATGGTGCACCTGCCCCGGCTGTTCAACAGAGTGGTGTTGCTAAAGCATCACCTCAGAGTTGA 1968 0.5066 MAEEAQYSSGTDSAPLKRKYEDQSTHRPTGFSAPLSPPSPATGIELAKQRAQEVAARLLSGAPPLDAKRPKPDNGAPPTGFDSLDAKPQYSAPSAAPVSYGHQGTSKKIDIPNGRVGVIIGKGGDTIKYLQLQSGAKIQVTRDMDADPNSSTRMVELMGTPEAIASAEKLINEVLAEAEAGGSGIVARRLTGQAGSDEFVMKIPNNKVGLIIGKGGETIKNMQGSTGARIQVIPLHLPPGDTSTERTVKIDGTPEQIESAKQLVNQVISGENRLRNPAMSGGYPQQGYQSRPPSNWAPPVAPMQQPGYGYVQPGAYTGPSPQYNMPQPPYTGYPPQQSGGYSTSWDQSTAAPHQQSTHSGGYDYYSQQAQQPQNPGGPAPSADGSTYNYSQQPSSGYNQQGQGYAQDGYNGYNAPSQSGYGQPPSYDQQQGYGSATGYGSGSNPAQEGHTANYASQGDSAQAPSVPPSTIAQQGYPTSQQPSSNNANYPPQGTPQSGYGIPPTSQAAYGNQPQSGYGSGYGPPQSQKPAGNPPVYGQSQSPSTAGGYGQSAYPAQPPPSGYAQLESGPQRAPPSGFGGAVQPGYGPQSYGTPQGGQPGYGQAPPPYGNNSYGAGYTQTPAYTSDSNAGGNSRGSYDGAPAPAVQQSGVAKASPQS* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1413 655 CDD KH-I 198 264 - -
Apr5g1413 655 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 52 648 - -
Apr5g1413 655 MobiDBLite consensus disorder prediction 274 655 - -
Apr5g1413 655 MobiDBLite consensus disorder prediction 1 107 - -
Apr5g1413 655 ProSiteProfiles Type-1 KH domain profile. 196 264 - -
Apr5g1413 655 MobiDBLite consensus disorder prediction 610 632 - -
Apr5g1413 655 CDD KH-I 106 171 - -
Apr5g1413 655 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 195 270 IPR036612 GO:0003723
Apr5g1413 655 ProSiteProfiles Type-1 KH domain profile. 104 171 - -
Apr5g1413 655 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 106 182 IPR036612 GO:0003723
Apr5g1413 655 SMART kh_6 103 176 IPR004087 GO:0003676
Apr5g1413 655 SMART kh_6 195 269 IPR004087 GO:0003676
Apr5g1413 655 Gene3D K Homology domain, type 1 99 191 IPR036612 GO:0003723
Apr5g1413 655 Gene3D K Homology domain, type 1 192 293 IPR036612 GO:0003723
Apr5g1413 655 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 52 648 - -
Apr5g1413 655 MobiDBLite consensus disorder prediction 334 549 - -
Apr5g1413 655 Pfam KH domain 200 265 IPR004088 GO:0003723
Apr5g1413 655 Pfam KH domain 108 173 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1413 Apr-Chr5 18217503 18224387 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1413 K13210 - gmx:100813135 892.493