Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1396 ATGGATTCTTCACAAGGGTCTACGCTGGCTGGTTTTGTGGACAATGCATCTATTAAGCGGGATGAATCTTGTTTTGATGGCATTCCTGTGTATGTTAAGGAGCTAATTGCTGGAGGCTTTGCTGGTGCTCTTTCTAAGACTGCTGTTGCACCTCTAGAACGGGTCAAGATACTCTGGCAGACAAGGACAGCAGGATTTCAGTATCTTGGGGTGCACCAATCTTTGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAAGGAAATGGAGCTAGTGTTATCCGCATTGTTCCATATGCCGCCTTGCATTTTATGACTTACGAGCGGTATAAAAGTTGGATCTTGGATAATTATCCTATGTTAGGAACAGGTCCTTTTATTGATCTTTTAGCTGGCTCCGCAGCAGGAGGAACTTCAGTTTTATGTACATACCCCTTGGATCTTGCCCGTACCAAACTTGCTTATCAGGTGGCAGACACAAGAGGAAGTATCAATGATGGTATGAAAGGAGTTCAGTCTCAATCTGCACATAATGGCATTAAAAGTGTGCTTACAAGTGTCTATAAGGAAGGTGGAGTTCGTGGGCTTTATAGGGGTGCAGGACCAACCCTTACTGGAATTCTTCCATATGCTGGTTTGAAGTTCTACATGTATGAGGAATTGAAGACTCGTGTTCCTGAAGAACATCAGAAGTCCATTTTGATGCGTCTTTCTTGTGGAGCTCTTGCTGGATTGTTTGGGCAGACTTTAACATACCCTTTAGATGTTGTTAAGAGGCAGATGCAGGTTGGCAACCTGCAAAATGCAGCTCATGCAGATGCTAGATACAGAAATACACTTGACGGACTTAGGACAATTGTTCGTCAGCAAGGGTGGAGGCAGTTGTTTGCTGGCGTAAGCATTAACTATATAAGGATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGACTTGGCTTGGCATACCACCTCAGCAAAAGTCTCGATCAGTTTCAGCAGCATAA 1023 0.4301 MDSSQGSTLAGFVDNASIKRDESCFDGIPVYVKELIAGGFAGALSKTAVAPLERVKILWQTRTAGFQYLGVHQSLNKLLKHEGFLGLYKGNGASVIRIVPYAALHFMTYERYKSWILDNYPMLGTGPFIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVADTRGSINDGMKGVQSQSAHNGIKSVLTSVYKEGGVRGLYRGAGPTLTGILPYAGLKFYMYEELKTRVPEEHQKSILMRLSCGALAGLFGQTLTYPLDVVKRQMQVGNLQNAAHADARYRNTLDGLRTIVRQQGWRQLFAGVSINYIRIVPSAAISFTTYDMMKTWLGIPPQQKSRSVSAA* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1396 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 115 IPR018108 -
Apr5g1396 340 PANTHER GRAVES DISEASE MITOCHONDRIAL SOLUTE CARRIER PROTEIN-LIKE 8 334 - -
Apr5g1396 340 Gene3D Mitochondrial carrier domain 30 327 IPR023395 -
Apr5g1396 340 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Apr5g1396 340 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Apr5g1396 340 PRINTS Mitochondrial carrier protein signature 90 110 IPR002067 GO:0055085
Apr5g1396 340 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Apr5g1396 340 PRINTS Mitochondrial carrier protein signature 199 217 IPR002067 GO:0055085
Apr5g1396 340 PRINTS Mitochondrial carrier protein signature 242 264 IPR002067 GO:0055085
Apr5g1396 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 226 IPR018108 -
Apr5g1396 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 325 IPR018108 -
Apr5g1396 340 Pfam Mitochondrial carrier protein 31 119 IPR018108 -
Apr5g1396 340 Pfam Mitochondrial carrier protein 233 326 IPR018108 -
Apr5g1396 340 Pfam Mitochondrial carrier protein 126 227 IPR018108 -
Apr5g1396 340 PANTHER SOLUTE CARRIER FAMILY 25 8 334 - -
Apr5g1396 340 SUPERFAMILY Mitochondrial carrier 32 321 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1396 Apr-Chr5 18092008 18096635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1396 107 335 Organic Solute Cotransporters AT1G14560 68.398 3.77e-115 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1396 - - gmx:100784421 617.076