Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1383 ATGAAGAAGACGAAGAGTGGCGAAGTAAATGAAGAAAAAGGGGCGAAGTTGAGGGGTGCAGAGAGGTCGTCGTACTTCGCACGCAGAGAGGCAGCGAAGGTGTTGAGAGTGGTTCTCGAAGGAGATGCTAAGCGCCGCGCTCTCGCCTCCATCAAATCCCTCATCTATCAACCTTCCATCAGAAACAAGAAGGCCACGTTTGCTCTCATTTGTCAAACCCTCAAACATCTTCCCATCATCAAGGATGTCTTAGAAGTTGCTTCTATTCTCAACACCAAGTGGAGGAGACAACAAGAGTTGATTTATATCATTGTCTATGATATCCTTTTCGGCCAGGCAGTTTCATTGGTTGGTGATGCAGAGAAGTATCTTATGCGCCACAAAGATGCTCTACATTCAACTCTGAAGCAGCTCTTGTCACAGAGAAATGTGAAGACGGTTAAACAGTTGGTTGCTCTTCATGAAGTTCCTGATGTTTCTGTACCTCGTTATGTTCGTGTGAATACACTTAAACTGGATGTTGATTCTGCCTTTCATGAACTTCAGGAAAAATACTCGGTTCGAAAGGATGATTTACTGCCTGACTTGCTGGTACTCCCACCCGGCACTGATTTACATGATCATCCTCTTGTGAAGAATGGAAGTATCTTTATGCAAGGTAAGGCAAGTTCAATGGCAGCACCAGCCCTTAGCCCTGAACCAGGATGGGAGGTTCTTGACGCATGTGCGGCACCAGGAAATAAAACTGTCCACCTTGCTGCCCTTATGAAGAGAAAGGGTAGGATTATAGCATGTGAGCTCCAAAAAGAAAGGATTAAGCGTTTGAAAGACACTATAAAGCTATCCGGTGCTTCCAACATACATGTCCTAAATGAGGATTTCTTGAACATTAATCCCAAGGACTCTTCATATTCTAAGGTGAAAGCTATTCTTTTGGATCCTTCCTGCTCTGGTTCTGGTACTGCTGCTTCAAGACTTGACCATCTGCTCCCATCTAAAGCAGCAGGTCAGAATACTGATATGGAAAGATTGAACAAGCTTGCAGCTTTTCAGAGAAAGGCTCTTCAACATGCTTTACTTTTTCCAGCAGTTGAAAGAATTGTCTATAGTACATGTTCAATCAACCAAATTGAGAATGAGGATGTCATCAAATCTGTTCTGCCCATAGCCGAATCATATGGATTCCAATTGGCAAAACCCTTCCCCCAGTGGCAGCGGCGTGGTCTTCCAGTGTTTGAAGGCTCTGCTTGCCTGGTTCGGACAGATGCTGCCAAGGATGGCGAGGGTTTCTTCATTGCTTTGTTTACCAAGAAGAATGCTACTAAATTTTCGGCAAGGTCAAATAAAAATGAAACTAAAACATCCTACTGCTCTCCCAGAATTAAAAACGTTCAAAGTAAAAAATCTGTACCGTTTATTAGCACTAACCCATTCAGAATGTGGTTATATGATCAACTGAACCGCCGCAAGTATAACATGTAG 1482 0.4345 MKKTKSGEVNEEKGAKLRGAERSSYFARREAAKVLRVVLEGDAKRRALASIKSLIYQPSIRNKKATFALICQTLKHLPIIKDVLEVASILNTKWRRQQELIYIIVYDILFGQAVSLVGDAEKYLMRHKDALHSTLKQLLSQRNVKTVKQLVALHEVPDVSVPRYVRVNTLKLDVDSAFHELQEKYSVRKDDLLPDLLVLPPGTDLHDHPLVKNGSIFMQGKASSMAAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGRIIACELQKERIKRLKDTIKLSGASNIHVLNEDFLNINPKDSSYSKVKAILLDPSCSGSGTAASRLDHLLPSKAAGQNTDMERLNKLAAFQRKALQHALLFPAVERIVYSTCSINQIENEDVIKSVLPIAESYGFQLAKPFPQWQRRGLPVFEGSACLVRTDAAKDGEGFFIALFTKKNATKFSARSNKNETKTSYCSPRIKNVQSKKSVPFISTNPFRMWLYDQLNRRKYNM* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1383 493 Gene3D Vaccinia Virus protein VP39 219 445 IPR029063 -
Apr5g1383 493 PANTHER BNAA09G04380D PROTEIN 18 452 - -
Apr5g1383 493 Pfam 16S rRNA methyltransferase RsmB/F 229 435 IPR001678 GO:0008168
Apr5g1383 493 Gene3D Sun protein; domain 3 154 218 - -
Apr5g1383 493 CDD AdoMet_MTases 238 326 - -
Apr5g1383 493 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 161 438 IPR029063 -
Apr5g1383 493 PRINTS RNA (C5-cytosine) methyltransferase signature 210 224 IPR023267 GO:0001510
Apr5g1383 493 PRINTS RNA (C5-cytosine) methyltransferase signature 239 249 IPR023267 GO:0001510
Apr5g1383 493 PRINTS RNA (C5-cytosine) methyltransferase signature 308 320 IPR023267 GO:0001510
Apr5g1383 493 PRINTS RNA (C5-cytosine) methyltransferase signature 364 380 IPR023267 GO:0001510
Apr5g1383 493 PRINTS RNA (C5-cytosine) methyltransferase signature 420 437 IPR023267 GO:0001510
Apr5g1383 493 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 153 438 IPR001678 GO:0008168
Apr5g1383 493 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 18 452 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1383 Apr-Chr5 17975278 17979771 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1383 K15264 - gmx:100775620 812.757