Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1380 ATGGATTTGAGGGGCATTGGGTTGGACCCTGCTCTGTTGGATTTCCTGCTCGACCACGTTGATTTCTCCGATGAAACTGACGCCAAGTCACACCACGCGCCGTCTCGAACCTACGTTCGAGACTCAAAGGCGATGGCGAGCACGCTGGCGGACATACTTGACTACCCAGACGCGTACAAGTTCGTGGTGGACATGCCGGGGCTGAAATCCGATCAAATAAAGGTTCACGTGGAGGACGACGCGCTGGTGGTGAGTGGAGAGAGGAGAAGGGACAAAGATAAAGACCACAAAGATGGCGTCAAGTACCTTCGAATGGAAAGGAGACAAGGGAAGTTCCTGAAGAAGTTCGAGCTTCCTTGCAATGCCAACCCTGATGAAATCTCTGCATGCTATCTCGATGGTGTTCTCACTGTCACTGTCCATAAGAAACCCCCTCCCGAGCCCAAGAAGCCCAAGATCATTCAGGTCCAAGTCACTTCCCCCGAAGCCCAAAACCAGCCCGTGCCTCAGCCCCATGCACCAACCCAAGATGGAGGACAAGACCCCCAGCCCCAGGAGTGA 561 0.5419 MDLRGIGLDPALLDFLLDHVDFSDETDAKSHHAPSRTYVRDSKAMASTLADILDYPDAYKFVVDMPGLKSDQIKVHVEDDALVVSGERRRDKDKDHKDGVKYLRMERRQGKFLKKFELPCNANPDEISACYLDGVLTVTVHKKPPPEPKKPKIIQVQVTSPEAQNQPVPQPHAPTQDGGQDPQPQE* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1380 186 MobiDBLite consensus disorder prediction 142 186 - -
Apr5g1380 186 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 159 IPR002068 -
Apr5g1380 186 SUPERFAMILY HSP20-like chaperones 32 153 IPR008978 -
Apr5g1380 186 CDD ACD_sHsps-like 51 140 - -
Apr5g1380 186 MobiDBLite consensus disorder prediction 157 186 - -
Apr5g1380 186 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 9 167 - -
Apr5g1380 186 Pfam Hsp20/alpha crystallin family 51 157 IPR002068 -
Apr5g1380 186 Gene3D - 15 158 IPR008978 -
Apr5g1380 186 PANTHER 17.1 KDA CLASS II HEAT SHOCK PROTEIN-LIKE 9 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1380 Apr-Chr5 17968376 17968936 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1380 K13993 - twl:120004992 199.904