Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr5g1376 | ATGCGGAAAGCCATTGCAAAACCCTGTTCTTCATGTACGCCTCCAATCCCAAATCTCTCTGTCGTAACCTCCATTGCATCAATCCTTCAAAACCAAAATCCCCAAAACCCACATTGTGAATCTCTCAAAGAGTTCTCATCTCACCTCACCCCAACCTTCGTTATCCACGTCATCAAGAATCTAAAGAACCCTCACCACGCCCTTTCATTCTTCAACTGGGCCTCAAACCCTAAACCCAACCCTAACAACTACTCTCACACTCCCTCCTGTTACGCCGCCATCACCGATCTCTTGCTCTCTCACTCACTCTTCTCCACCGCATTCTCCTTCCTCCGCCACTCTAACAAACTCTCTGATTCCCTCATTTTCAGATTCATCAATGCTTTGGGTCAACGTGGCGATATCAGGGGTGCCATTCATTGGTTCCACAAGGCCAAAACCTTTACAAGAGGACGCTATTTGTTCTCCTGTAACGCCATATTGGGTGTGCTTGTGAAGGCGAATCGAATCAATTTAGCCCAGGCTATTTACGATCAGGTTGTAGCAGAAGGTGTGGTGGAACTCGATGTTTGCACTTACACCACCATGATTCGGGGATTCTGTAAAATGGGCATGGTCGAGAGTGCAAACAAGGTGTTCGACGAAATGCGCTGTGGACCCAACATGTTTACTTACAACACTTTGATTCACGGGCTTTGCAAGAAAGGTTACATGGAGGGTGCCAAGAAGGTTTTTAACAGGTTGGTAGAGAGTGAGAGTTGTAAACCTGATGTGGTGACTTTTACCACTTTGATTGATGGGTATTCCAAGAAAGGTGAGTTACGTGAGGCGTTGAAGTGCATGGAGGAGATGGTGGAACGAGGGTGTTGCCCTAATGTTGTGACCTACAACGCGTTGATTGAAGGTCTTTGTTTGTGTGGGAATGTGGACGAGGCCAAGAGGATGATGACTAGGATGAGGTTAAACGGCTTGAAAGACAATGTTGCCACAAACACTAGCATTTTGAAGGGTTTTTGTATTGTGGGAAAGTCTGATGATGCTATTAACCATTTTAAGGGAATGATTAGTCGTGGGATGAATCCAGATGTGAAAGCATATAGTGTCATTGTCAATGAGTATTGCAAGATTAGAAAACCGAGTGAAGCAGTGTCTCTTCTGAGGGAAATGGTGATCAGGGGCATTAAGCCAAGCATGTCGAGTTTCAATGCAGTGTTTAGAGTTCTTGTCGATAAGGAGGAGCTTGAAGAAGTAGTTCTTCTTTTAAAGCAGATGCCTCGGATGGGTTGCACGCCCAACTTCTTATCGTATAGCATTGTGGTTTGCAGTCTTTGTAAAGTGAAGGGTAAGATGCAACAGGTTGAAGAGCTTGTTGGGAACATGCTTCAGAATGGACATAACCTGGATGCCACCATGTACAATTGCTTGCTTGCTGGATATTGTGAAGATGAGGATGAAGAAATGGCATTGAAGACGGTTTATGACATGATTGACAAGAACTTTGTTATCAACCATGACACTTTCTGCACTTTTGTGAAGGAGTTGTGTGCAAAGGAAAAGGTCAAAGAGGCGGAGAGAGTACTTGAAGAGATGTGCAGGAGATACCCTGTGTCTGATGTAAATGCTTATAGAATGGTGCTACGCCAGTTGGGTGGGAATGCTGAGGGGCTGCGGTTTCGCAATCCTCCTTTTCTCCTTCTGCATCAACTTTCATAA | 1713 | 0.4495 | MRKAIAKPCSSCTPPIPNLSVVTSIASILQNQNPQNPHCESLKEFSSHLTPTFVIHVIKNLKNPHHALSFFNWASNPKPNPNNYSHTPSCYAAITDLLLSHSLFSTAFSFLRHSNKLSDSLIFRFINALGQRGDIRGAIHWFHKAKTFTRGRYLFSCNAILGVLVKANRINLAQAIYDQVVAEGVVELDVCTYTTMIRGFCKMGMVESANKVFDEMRCGPNMFTYNTLIHGLCKKGYMEGAKKVFNRLVESESCKPDVVTFTTLIDGYSKKGELREALKCMEEMVERGCCPNVVTYNALIEGLCLCGNVDEAKRMMTRMRLNGLKDNVATNTSILKGFCIVGKSDDAINHFKGMISRGMNPDVKAYSVIVNEYCKIRKPSEAVSLLREMVIRGIKPSMSSFNAVFRVLVDKEELEEVVLLLKQMPRMGCTPNFLSYSIVVCSLCKVKGKMQQVEELVGNMLQNGHNLDATMYNCLLAGYCEDEDEEMALKTVYDMIDKNFVINHDTFCTFVKELCAKEKVKEAERVLEEMCRRYPVSDVNAYRMVLRQLGGNAEGLRFRNPPFLLLHQLS* | 571 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr5g1376 | 570 | TIGRFAM | PPR: pentatricopeptide repeat domain | 294 | 324 | IPR002885 | - | |
| Apr5g1376 | 570 | TIGRFAM | PPR: pentatricopeptide repeat domain | 223 | 258 | IPR002885 | - | |
| Apr5g1376 | 570 | TIGRFAM | PPR: pentatricopeptide repeat domain | 259 | 293 | IPR002885 | - | |
| Apr5g1376 | 570 | TIGRFAM | PPR: pentatricopeptide repeat domain | 365 | 397 | IPR002885 | - | |
| Apr5g1376 | 570 | TIGRFAM | PPR: pentatricopeptide repeat domain | 400 | 432 | IPR002885 | - | |
| Apr5g1376 | 570 | TIGRFAM | PPR: pentatricopeptide repeat domain | 191 | 217 | IPR002885 | - | |
| Apr5g1376 | 570 | TIGRFAM | PPR: pentatricopeptide repeat domain | 471 | 503 | IPR002885 | - | |
| Apr5g1376 | 570 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 257 | 291 | IPR002885 | - | |
| Apr5g1376 | 570 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 292 | 326 | IPR002885 | - | |
| Apr5g1376 | 570 | Pfam | PPR repeat | 187 | 217 | IPR002885 | - | |
| Apr5g1376 | 570 | Pfam | PPR repeat | 218 | 247 | IPR002885 | - | |
| Apr5g1376 | 570 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 189 | 219 | IPR002885 | - | |
| Apr5g1376 | 570 | Pfam | PPR repeat family | 468 | 515 | IPR002885 | - | |
| Apr5g1376 | 570 | Pfam | PPR repeat family | 256 | 304 | IPR002885 | - | |
| Apr5g1376 | 570 | Pfam | PPR repeat family | 361 | 408 | IPR002885 | - | |
| Apr5g1376 | 570 | SUPERFAMILY | HCP-like | 130 | 323 | - | - | |
| Apr5g1376 | 570 | Pfam | PPR repeat | 332 | 358 | IPR002885 | - | |
| Apr5g1376 | 570 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 397 | 431 | IPR002885 | - | |
| Apr5g1376 | 570 | Gene3D | Tetratricopeptide repeat domain | 343 | 448 | IPR011990 | GO:0005515 | |
| Apr5g1376 | 570 | Gene3D | Tetratricopeptide repeat domain | 449 | 554 | IPR011990 | GO:0005515 | |
| Apr5g1376 | 570 | Gene3D | Tetratricopeptide repeat domain | 237 | 342 | IPR011990 | GO:0005515 | |
| Apr5g1376 | 570 | Gene3D | Tetratricopeptide repeat domain | 108 | 236 | IPR011990 | GO:0005515 | |
| Apr5g1376 | 570 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 327 | 361 | IPR002885 | - | |
| Apr5g1376 | 570 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 468 | 502 | IPR002885 | - | |
| Apr5g1376 | 570 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 362 | 396 | IPR002885 | - | |
| Apr5g1376 | 570 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 432 | 467 | IPR002885 | - | |
| Apr5g1376 | 570 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 21 | 544 | - | - | |
| Apr5g1376 | 570 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 221 | 256 | IPR002885 | - | |
| Apr5g1376 | 570 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 21 | 544 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr5g1376 | 180 | 554 | Glycosyltransferase | AT1G05670 | 23.274 | 3.76e-27 | 114 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr5g1376 | - | - | aprc:113866240 | 1157.51 |