Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1356 ATGGATACTAAACAAGTATATTGGGCCATCATTGTAGCATGGCTTACTTTGTTTGAAGGAAAAATGATGCTTGTTAAAGGCGATCTTGATTATAAAGAGGCTCTCACCAAGTCCCTTATATTCCTAGAGGCACAACGTTCAGGGAAGCTCCCTCCAAATAACAGGGTGCCTTGGCGAGGAGACTCGGCACTTGATGATGGAAAACTCGCTCATGTGGACCTTGCTGGGGGATACTATGATGCAGGGGATAATGTCAAATATGGGCTTCCCATGGCTTTCACTGTTACAACGCTAGCATGGAGTGCAATGTTTTACAAGTCTGAATTTGAAGCTGCAAAGGAATTAAGAAATATTGAGGACGCCATTCGCTGGGGTACTGATTATTTTATAAAAGCTAGTTCTCGACACAAAAGATTATATGTGCAGGTAGGGGACCCAGAAGAAGATCACCACTGTTGGGTTCCGCCAGAATATATGAAGACAAAAAGAACGGTTTTGAAGATTGATAGTAACACGCCCGGGACTGAGATCGCAGCAGAAACTGCAGCTGCAATGGCTGCTTCTTCCATTGTTTTTAGGCAATCAGATCGTAAATATGCACGTCGTCTTCTCAACAAAGCTAAATTGCTTTTCCAATTGGCGAAATCGCATAAAGGAACCTTCGATGGAGAGTGTCCCTTCTATTGCTCTTATTCCGGCTATCAAGATGAACTGATGTGGGCAGCAACTTGGCTATACTTGGCTACAAGGAAGTCTATGTATTTGAAATATGTAAAAGAAGAATCCATAAGTGCTGGTGTAGCGGAATTTAGTTGGGACCTTAAATATGCTGGAACACAAACCCTTCTCACCCAGTTACATTTTGAAGGTGAAAAGGATCTAGAAACGTTCAAAAACCACGGCGAAAGTTTCATATGCTCTGTCCTTCCCGAGAGTCCCTACCACCAGATTAAATTGACTCCTGGTGGCTTTATTCATTTGAGAGATGGAGCCAACACACAATATGCCACCAGCACGGCTTTCTTGTTCGTTGTATATAGTGATTTGTTAGCCAATCATAAACAGAAAATCACTTGTGGAGACAAACAATTTAGCTCGTCCCATCTCCTTTCTTTTGCTAAGAAACAAGTTAGTATAGCACAGATGGATTACATACTTGGGAAAAACCCTGAAGGAAGATCGTACATGGTAGGATTTGGCAAAAACCCACCAACGCAAGCTCACCATAGAGGCGCTTCTGTGGAAAAGGTGGATAAGGGGGAGGAGTTCAATTGTGCCTTGAGCTTCTCTAAATGGTTTCAAAAAGATGAACCTAACCCACATGAACTCACTGGTGCCATTGTGGGTGGACCTGACCGCAACGACAAGTTCAACGATAAACGCTGGGATTCACCCAAGACTGAACCATGCACATACGTTAATTCCTTAGCAGCTGGAGCTCTAGCCAAGCTTGCATCTTTGGGTTGA 1467 0.4329 MDTKQVYWAIIVAWLTLFEGKMMLVKGDLDYKEALTKSLIFLEAQRSGKLPPNNRVPWRGDSALDDGKLAHVDLAGGYYDAGDNVKYGLPMAFTVTTLAWSAMFYKSEFEAAKELRNIEDAIRWGTDYFIKASSRHKRLYVQVGDPEEDHHCWVPPEYMKTKRTVLKIDSNTPGTEIAAETAAAMAASSIVFRQSDRKYARRLLNKAKLLFQLAKSHKGTFDGECPFYCSYSGYQDELMWAATWLYLATRKSMYLKYVKEESISAGVAEFSWDLKYAGTQTLLTQLHFEGEKDLETFKNHGESFICSVLPESPYHQIKLTPGGFIHLRDGANTQYATSTAFLFVVYSDLLANHKQKITCGDKQFSSSHLLSFAKKQVSIAQMDYILGKNPEGRSYMVGFGKNPPTQAHHRGASVEKVDKGEEFNCALSFSKWFQKDEPNPHELTGAIVGGPDRNDKFNDKRWDSPKTEPCTYVNSLAAGALAKLASLG* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1356 488 PANTHER ENDOGLUCANASE 16-RELATED 6 485 - -
Apr5g1356 488 Gene3D - 26 488 IPR012341 GO:0005975
Apr5g1356 488 PANTHER ENDO-1,4-BETA-GLUCANASE 6 485 - -
Apr5g1356 488 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 384 410 IPR018221 -
Apr5g1356 488 SUPERFAMILY Six-hairpin glycosidases 29 485 IPR008928 GO:0005975
Apr5g1356 488 Pfam Glycosyl hydrolase family 9 31 481 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1356 Apr-Chr5 17784873 17787489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1356 21 486 Glycoside Hydrolase AT3G43860 69.807 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1356 K01179 - gmx:100810971 827.394