Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1350 ATGCATTTGCGACTGCGATCCACTTCCACCGTAAATCAATTAACCCCACGCGCCTATCTCTTCCACTCGCTCCACCAATGGTTCTCCATCCTCCGCCACGCCATCGCCGCATCCGATTTACACCTCGGAAAACGCGCTCACGCGCGCATTTTAACGTCGGGGCACAACCACGATCGTTTTCTAACGAACAACCTCATCACCATGTACGCCAAATGCGGCTCACTCTCCTCCGCGCGTCAACTGTTTGACATAACACCGGACAGCGACAGAGACCTCGTAACCTGGAATGCCATGCTCTCCGCCTATGCCCTCGCCGACAAAGCTCGTGACGGCTTTCACCTTTTCCGTCTTTGCCGTCACTCGGTCGTGTCGACCACGCGCCACACTTTAGCTCCTGTGTTCAAAATGTGCCTCCTCTCTGGTTCTCTCTTTGCTTCCGAGACCCTTCATGGTTTCGCCGTTAAGGTTGGGTTGGAATGGGACGTGTTTGTGGCTGGTGCTTTGGTTAATATATACGCTAAGTTTCGACGAATCAGAGAGGCACGTATTTTGTTCGATGGAATGCCTGTGAGAGACGTTGTGCTTTGGAACGTGATGATGAAGGCTTATGTGGACACGTGTCTTGATGATGATGCGTTGCTTCTCTTCTCTGCGTTTCACAGAACTGGGTTGCGTCCTGATAGCATCAGTTTTCGGACTATTATGGGGGTGGATAGCGTTTTTGAGTGGCAGTTGAAGCAGGTTCGAGCTTATGCTACCAAATTATTGCTTTGTGCTGCTGCTGCTGCTGATGATGTAGTTGTGTGGAACAAGACACTGTCTAGGTATCTCCAAAATGGTGAAGCTTGGAAAGCTGTTGATTGCTTTGTGGATATGATTGGATCACGAGTACCGTGTGATGGCTTGACTTTTGTTGTGATGCTGTCTGTGGTTGCCAGTGTGAATTGTATTGAACTGGGGAAACAGATTCATGGCATTGTTGTGAGATCGGAGTTGGATCGCGTTGTGTCTGTTGCTAATAGCCTTATGAATATGTATGTCAAGGCTGGCTCTGTGAGTTATGCAAGAACAGTGTTTGGTCAAATGAAAGAACTGGATTTGATATCGTGGAACACCGTGATATCTGGTTGTGCGTTGAGTGGTTTGGAGGAGTTGTCTGTGAGATTGTTTGTTGATTTATTATGCAGTGGCCTATTGCCGGATCAGTTCACCATCGCAAGTGTTTTGAGGGCTTGCTCCTCTCTTGAAGAAGGTTACTATCTTGGTAAGATGATTCATAGTTGTGCAATAAAAGCTGGTGTTGTCTTGGATTCATTTGTTTCGACTACTCTAATTGATTTATATTCCAAGAGTGGAAAGATGGAGGAGGCAGAACATCTTTTTCTTAACCAAGATGGATTTGATTTGGCATCTTGGAATGCTATGATGCATGGGTACATAGTCAGTGATAACTACCACAAAGCATTGAGGCTCTTTGTTCTAATGCATGGAAGTGGAGAGAGAGCAGATCAAATTACTCTGGCCAATGTAGCTAAAGCTGCTGGGTGTTTGGTGGGGCTTGAACAAGGGAAGCAAATTCATGCTGTTGTTATAAAAAAGGGGTTTAATTTAGATTTGTTTGTCATTAGTGGTATTCTTGACATGTATCTAAAATGTGGAGAGATGGAAAGTGCAAGCAAAGTGTTTGGTGAGATCCCTTTGCCGGATGATGTTGCTTGGACTACTATGATATCAGGATGCGTGGAAAATGGAGATGAAGAGCATGCTCTTTTTACTTACCATCAGATGAGACTTGCTGGGGTGCAACCTGATGAGTATACCTTTGCCACCCTTGTCAAAGCCAGTTCTCTTTTGACAGCATTGGAACAAGGGAGACAGATTCATGCCAATGTTATTAAGCTGAACTGTGCTTTTGATCCTTTTGTCACGACTTCACTTGTTGACATGTATGCCAAGTGTGGGAGCATTGACGATGCATATGGTTTGTTTAAAAGAATGAACACGAGGAATATTTCCTTGTGGAATGCCATGATAGTAGGATTAGCCCAACATGGAAATGCTGAGGAAGCCCTACACTTTTTCAGAGATATGAAATCTAGGGATGTAGCACCAGATAGAGTTACTTTTATAGGTGTGCTTTCTGCGTGCAGTCATTCTGGCTTGATAACTGAAGCCTATGAAAACTTCTATTCCATGCAGAATAACTATGGAATTGAACCTGAGATTGAGCACTATTCTTGTCTTGTTGACGCCCTTAGCCGAGCGGGGCGTATACAAGAAGCTGAAAAGGTGATATTATCAATGCCTTTTGTAGCTTCTGCTTCAATGTATAGAACTCTACTTAATGCTTGTAGGGTTCAGGGAGACAAAGAGACGGGAAAACACATAGCAGAAAAGCTTTTTAACTTGGAGCCATCTGATTCAGCAGCATATGTTCTTTTGTCCAATATTTATGCAGCTGCTAATCAATGGGAAAATGTGGCAAGTGCTAGAAAAATGATGAAAAGAGTAAAGGTAAAGAAGGATCCCGGATTTAGTTGGGTAGATATGAAGAACAAGGTGCATTTGTTTGTAGCTGGCGATAGGTCACATGAAGAAACTGATGTGATATATAATAAGGTGGAGCATGTTATGAAAAGGATCAGAGAAGAAGGATATGTCCCTGATACAGACTTTGCACTTGCTGATGTAGAAGAAGAAGATAAAGAAAGTTCTTTATATTATCATAGTGAGAAGCTGGCAATAGCTTATGGGCTCCTAAAAACGCCACCATCCACCACATTAAGGGTAATTAAAAACCTTAGAGTGTGTGGAGATTGCCATAATGCAATCAAATATATATCAAAGGTTTATCAGCGAGAAATTGTTTTGAGAGATGCAAATCGATTTCATCATTTCAGGAGCGGGATCTGTTCCTGTGGGGATTACTGGTGA 2934 0.4352 MHLRLRSTSTVNQLTPRAYLFHSLHQWFSILRHAIAASDLHLGKRAHARILTSGHNHDRFLTNNLITMYAKCGSLSSARQLFDITPDSDRDLVTWNAMLSAYALADKARDGFHLFRLCRHSVVSTTRHTLAPVFKMCLLSGSLFASETLHGFAVKVGLEWDVFVAGALVNIYAKFRRIREARILFDGMPVRDVVLWNVMMKAYVDTCLDDDALLLFSAFHRTGLRPDSISFRTIMGVDSVFEWQLKQVRAYATKLLLCAAAAADDVVVWNKTLSRYLQNGEAWKAVDCFVDMIGSRVPCDGLTFVVMLSVVASVNCIELGKQIHGIVVRSELDRVVSVANSLMNMYVKAGSVSYARTVFGQMKELDLISWNTVISGCALSGLEELSVRLFVDLLCSGLLPDQFTIASVLRACSSLEEGYYLGKMIHSCAIKAGVVLDSFVSTTLIDLYSKSGKMEEAEHLFLNQDGFDLASWNAMMHGYIVSDNYHKALRLFVLMHGSGERADQITLANVAKAAGCLVGLEQGKQIHAVVIKKGFNLDLFVISGILDMYLKCGEMESASKVFGEIPLPDDVAWTTMISGCVENGDEEHALFTYHQMRLAGVQPDEYTFATLVKASSLLTALEQGRQIHANVIKLNCAFDPFVTTSLVDMYAKCGSIDDAYGLFKRMNTRNISLWNAMIVGLAQHGNAEEALHFFRDMKSRDVAPDRVTFIGVLSACSHSGLITEAYENFYSMQNNYGIEPEIEHYSCLVDALSRAGRIQEAEKVILSMPFVASASMYRTLLNACRVQGDKETGKHIAEKLFNLEPSDSAAYVLLSNIYAAANQWENVASARKMMKRVKVKKDPGFSWVDMKNKVHLFVAGDRSHEETDVIYNKVEHVMKRIREEGYVPDTDFALADVEEEDKESSLYYHSEKLAIAYGLLKTPPSTTLRVIKNLRVCGDCHNAIKYISKVYQREIVLRDANRFHHFRSGICSCGDYW* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1350 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Apr5g1350 977 Gene3D Tetratricopeptide repeat domain 266 422 IPR011990 GO:0005515
Apr5g1350 977 Gene3D Tetratricopeptide repeat domain 145 256 IPR011990 GO:0005515
Apr5g1350 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 669 IPR002885 -
Apr5g1350 977 Gene3D Tetratricopeptide repeat domain 733 911 IPR011990 GO:0005515
Apr5g1350 977 Gene3D Tetratricopeptide repeat domain 620 732 IPR011990 GO:0005515
Apr5g1350 977 PANTHER - 220 970 - -
Apr5g1350 977 PANTHER - 29 237 - -
Apr5g1350 977 Pfam DYW family of nucleic acid deaminases 885 977 IPR032867 GO:0008270
Apr5g1350 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Apr5g1350 977 SUPERFAMILY TPR-like 646 835 IPR011990 GO:0005515
Apr5g1350 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 704 IPR002885 -
Apr5g1350 977 TIGRFAM PPR: pentatricopeptide repeat domain 340 365 IPR002885 -
Apr5g1350 977 TIGRFAM PPR: pentatricopeptide repeat domain 644 672 IPR002885 -
Apr5g1350 977 TIGRFAM PPR: pentatricopeptide repeat domain 673 705 IPR002885 -
Apr5g1350 977 TIGRFAM PPR: pentatricopeptide repeat domain 471 503 IPR002885 -
Apr5g1350 977 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Apr5g1350 977 TIGRFAM PPR: pentatricopeptide repeat domain 571 605 IPR002885 -
Apr5g1350 977 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 220 970 - -
Apr5g1350 977 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 237 - -
Apr5g1350 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Apr5g1350 977 Pfam PPR repeat 63 83 IPR002885 -
Apr5g1350 977 Pfam PPR repeat 340 365 IPR002885 -
Apr5g1350 977 Pfam PPR repeat 471 499 IPR002885 -
Apr5g1350 977 Pfam PPR repeat 167 191 IPR002885 -
Apr5g1350 977 Pfam PPR repeat 744 768 IPR002885 -
Apr5g1350 977 Pfam PPR repeat 93 116 IPR002885 -
Apr5g1350 977 Pfam PPR repeat 267 296 IPR002885 -
Apr5g1350 977 Pfam PPR repeat 442 461 IPR002885 -
Apr5g1350 977 Pfam PPR repeat 368 397 IPR002885 -
Apr5g1350 977 Pfam E motif 789 849 IPR046848 -
Apr5g1350 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Apr5g1350 977 Pfam PPR repeat family 568 614 IPR002885 -
Apr5g1350 977 Pfam PPR repeat family 670 717 IPR002885 -
Apr5g1350 977 Gene3D Tetratricopeptide repeat domain 7 144 IPR011990 GO:0005515
Apr5g1350 977 Gene3D Tetratricopeptide repeat domain 423 517 IPR011990 GO:0005515
Apr5g1350 977 Gene3D Tetratricopeptide repeat domain 519 619 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1350 Apr-Chr5 17751000 17754302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1350 186 977 Glycoside Hydrolase AT3G49170 35.243 4.14e-166 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1350 - - gmx:102666538 1572.76