Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1342 ATGGCTAATGAACGTGATCTCTTCTCAGCAGAGATTGTGAACCGAGGGATTGAATCATCAGGACCCAACGCGGGTTCATTGACGTTCTCTGTGAGGGTGAGAAGGAGGCTGCCAGATTTTCTTCAATCGGTGAATCTCAAGTACGTGAAATTGGGTTACCATTATCTGATAAACCATGGCATATACTTGTTCACCATACCCGTTCTTCTTGTGGTGTTTAGTGCTGAGGTTGGTAGCCTCAGCAAAGAGGACCTTTGGAAGAAGCTCTGGGAAGATGCACGTTACGATCTTGCCACCGTACTCTCTTCTTTTGGTGTCTTCGTTTTCACCTTATCCGTTTACTTCATGTCAAGGCCACGTCCCATTTACCTCATTGATTTTGCATGTTATAAGCCCGAAGATGAACTCAAGGTGTCAAGGGAACAATTCATGGAACTAGCAAGGAAATCAGGCAAGTTTGATGAAGGGAGCCTCGAATTCCAAAAGAGGATGCTAATGTCTTCAGGTATAGGGGACGAGACATACATCCCAAAATCAGTGGTAGCATCAACCGAAAACACCGCAACAATGAAAGAAGGTCGTGCTGAAGCATCCATGGTAATGTTCGGAGCACTTGATGAGTTGTTCGAGAAAAACCGTGTTCGACCAAAGGACGTGGGCATTCTAGTAGTGAATTGCAGCATCTTCAACCCAACACCATCGTTGTCAGCAATGATCATAAACCACTACAAGATGAGAGGGAACATATTGAGCTACAACCTTGGTGGCATGGGTTGTAGTGCGGGAATCATAGGTGTGGATTTGGCAAGGGACATTCTTCAAGCTAACCCTAATAACTATGCGGTTGTTGTGAGCACTGAGATGGTGGCATTCAATTGGTACCAAGGAAAAGAGAGGTCTATGCTCATTCCTAATTGTTACTTTCGGATGGGTTGTTCTGCTGTTTTGCTTTCAAACCGTCGTCGTGATTATAGCCGCGCTAAGTACCGTCTTGAGCATATTGTTCGTACCCATAAAGGTGCTGATGATCGCAGCTTCAGGTGTGTGTACCAAGAAGAAGATGATCAAAAGCTCAAGGGACTAAAGATTAGCAAGGACTTAATTGAAATTGGTGGTGATGCTTTGAAAACAAACATCACTACACTAGGACCCTTGGTGCTACCCTTTTCTGAGCAGCTTCTCTTCTTTGCCACCTTGGTGTGGAGGCACTTATTTGGCAATAAATCTGATGGGAATTCACCATCATTGAAGAAGCCATACATTCCTGACTACAAACTAGCTTTTGAGCATTTTTGTGTGCATGCTGCAAGCAAGGCCATTCTCGATGAGCTACAAAGGAACCTGGAATTGAGTGACAAGAACATGGAGGCATCAAGAATGACATTGCACCGCTTTGGCAACACATCTAGCAGCAGCATTTGGTATGAGTTGGCTTACATGGAAGCAAAGGAGAGTGTTAAAAGAGGAGACCGTGTTTGGCAACTAGCTTTTGGATCAGGCTTCAAGTGTAACAGTGTGGTTTGGCGTTCCATGAAAAGAATCCCCAAGCCTTCTAGGAACCCTTGGCTTGATTGCATCAACAGATATCCCGAGTCTCTCAACTAA 1605 0.4467 MANERDLFSAEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHGIYLFTIPVLLVVFSAEVGSLSKEDLWKKLWEDARYDLATVLSSFGVFVFTLSVYFMSRPRPIYLIDFACYKPEDELKVSREQFMELARKSGKFDEGSLEFQKRMLMSSGIGDETYIPKSVVASTENTATMKEGRAEASMVMFGALDELFEKNRVRPKDVGILVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGIIGVDLARDILQANPNNYAVVVSTEMVAFNWYQGKERSMLIPNCYFRMGCSAVLLSNRRRDYSRAKYRLEHIVRTHKGADDRSFRCVYQEEDDQKLKGLKISKDLIEIGGDALKTNITTLGPLVLPFSEQLLFFATLVWRHLFGNKSDGNSPSLKKPYIPDYKLAFEHFCVHAASKAILDELQRNLELSDKNMEASRMTLHRFGNTSSSSIWYELAYMEAKESVKRGDRVWQLAFGSGFKCNSVVWRSMKRIPKPSRNPWLDCINRYPESLN* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1342 534 Coils Coil 441 461 - -
Apr5g1342 534 PANTHER 3-KETOACYL-COA SYNTHASE 10 4 531 - -
Apr5g1342 534 CDD CHS_like 98 508 - -
Apr5g1342 534 Pfam FAE1/Type III polyketide synthase-like protein 114 403 IPR013601 GO:0006633|GO:0016020|GO:0016747
Apr5g1342 534 Gene3D - 123 511 IPR016039 GO:0016746
Apr5g1342 534 PIRSF Very_long_ch_3-ktacl-CoA_syn 39 534 IPR012392 GO:0006633|GO:0016020|GO:0016747
Apr5g1342 534 SUPERFAMILY Thiolase-like 108 326 IPR016039 GO:0016746
Apr5g1342 534 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 429 509 IPR013747 -
Apr5g1342 534 PANTHER 3-KETOACYL-COA SYNTHASE 4 531 IPR012392 GO:0006633|GO:0016020|GO:0016747
Apr5g1342 534 SUPERFAMILY Thiolase-like 332 510 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1342 Apr-Chr5 17669977 17675713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1342 2 533 Miscellaneous Gene Families AT2G26250 75.681 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1342 K15397 - gmx:100818799 1030.01