Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1339 ATGCTTGTCTCTGGAGTATCATGGGATCTGAAATGGCTCTTGCAATTCGTATTCTCAGCTTTTGTGATGGCGATTGGGTTGCACACGTTGGTAAAGAACACCGCATCCAAGTACTTTGAGGTTGACGCCAATTTTGAAGGGGAACAACACCACGCCATGCCTGGCCTTATCATGGATGATTCTCTTTGCGCCGTTTGTCGCAACCATGGCAATAAAAAGTGTTCGCGTTGCAAATCCGTTCGATACTGTTCACAAGCATGCCAACAGGCACACTGGAAATCTGAGCATAAGATGAAATGCAAGGAGCTGCAGAGCACAAGTGCAATGAATTTGGCTCAAACTGGGCCAATTAATCGTGGGTTCAGAGCTTCTGCACCTGTGAATAGAAGTACATCTTCTATTGCCCTGATCCCTGAATGTGGTAGTGGAACGTCTAGGCCTATAAAGCAGCCTAAAAATGATCTTTTTCCTTACAATGAATTTGTTAATTTTTTTAACTGGGACAAGCCAGGATTTCCTCCTTGTGGACTCTTAAATTGTGGAAACAGCTGCTTTGCAAACGTGGTTCTTCAATGTCTCTCATTCACAAGGCCTCTTATTGCCTACTTGTTAGAGAAGGGGCACCGTAGAGAATGCTGTCATAATGATTGGTGCTTTCTGTGTGAATTTGAAATCCATGTTGAAAAGGCGAGGATAGGTTCTCAGGCATTTTCTCCGATGAATATCCTCTCTCGTTTACCTAATATTGGTGGTACACTGGGTTATGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTGCCATTGATGCTATGCAATCTGTTTGTCTTGATGAATTTGGTGGGGAAAAAGCTGTCCTTCCTAAGCATCAAGAAACAACTCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGCACTGAATGTGAAAAAAATTCAAATCAATATGAAAATATGATGGACTTGACTGTGGAAATCCATGGAGACGCTGCTTCCTTGGAGGAATGTCTAGACCAATTTACTGCCAAGGAATGGCTTCATGGGGAAAATATGTATAAATGTGATGGGTGCAAGGGTTATGTTAAGGCATGGAAACGTCTCACTGTGAAACGAGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAGTAACCTTCCCTGAGACTTTGGATCTTAACCCTTACATGAGTGAAATTGGAGATGGATCAGATATTTATAAGCTATATGCTGTTGTAGTACATATTGATATGCTGAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCTGTGGAAACTGGTACAGAATTGATGATTGGAAGGTTACGAGAGTGGAATTGGAAGAGGTGCTTTCTCAGGGTGCATATATGCTGTTGTATAGCAGGGTTAGTGCTCGACCATCAGGCCTTCAAATTTTTGAATCTTCAGAGACAGCAGAAGCACAAACAGTCAAGGTGGACGTGCAACCTGGCCTAGATGAACAAGCTGAATGCCTCTCGGATATGCAGACCGTAACTTCTAGTAGAGGCTGTGAGGTTTTTCAATCTCACAACAGTCCAGAGTTGAAGGTTTCTGTTTGTGAAAACATGACTTTGACCGGAATGAACTCTGGAGTTAAAAGAGGGCATACTAAGGACGTGGATGTTATTGATGTTGCAAATGAGACTTCCTGCAGTGCTGTTGAATCATCTTCAATGCATAGTTCTGAAGCTGTGAAAGATTTGGTGGATATAAATATGGAGAGATCAAATCTATGCTCACCTGTTTTAGAACAGATTTCAGGCTTCATGGAAGTTCAAAATGATATGGCTAAGTCTGATCCTTCTCCATGTTTGCCAAATGGTTTTTCTTGCTTTGATAAGGATTCTGCTGCTCCAGGGGATTATCAAAACAAGCGGGAAGAGTCAGAACATGTAGATGTGATTAAATGCACTGGCAATGCAAATTATAGCAATGGATATGCCAGTGCAAACAACCATGATGTCCTAGTGGAAGATGGTGATGCAGTATCTTCTGGCATTGGTTCTTTTTCCACAGAAACATCCTCGGCTGAAATGCATCAATTGAAGCGGAGATTGTCATCCTACAGTTCTGAAGCTGACGGAGGAAATGATGTTAAGAAAATGGAAATATCAGGCAACAAGTTAGTAATTTAG 2211 0.4161 MLVSGVSWDLKWLLQFVFSAFVMAIGLHTLVKNTASKYFEVDANFEGEQHHAMPGLIMDDSLCAVCRNHGNKKCSRCKSVRYCSQACQQAHWKSEHKMKCKELQSTSAMNLAQTGPINRGFRASAPVNRSTSSIALIPECGSGTSRPIKQPKNDLFPYNEFVNFFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLEKGHRRECCHNDWCFLCEFEIHVEKARIGSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFAIDAMQSVCLDEFGGEKAVLPKHQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGENMYKCDGCKGYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLNPYMSEIGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFCGNWYRIDDWKVTRVELEEVLSQGAYMLLYSRVSARPSGLQIFESSETAEAQTVKVDVQPGLDEQAECLSDMQTVTSSRGCEVFQSHNSPELKVSVCENMTLTGMNSGVKRGHTKDVDVIDVANETSCSAVESSSMHSSEAVKDLVDINMERSNLCSPVLEQISGFMEVQNDMAKSDPSPCLPNGFSCFDKDSAAPGDYQNKREESEHVDVIKCTGNANYSNGYASANNHDVLVEDGDAVSSGIGSFSTETSSAEMHQLKRRLSSYSSEADGGNDVKKMEISGNKLVI* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1339 736 Pfam Ubiquitin carboxyl-terminal hydrolase 175 478 IPR001394 GO:0004843|GO:0016579
Apr5g1339 736 Gene3D - 57 106 - -
Apr5g1339 736 Gene3D Cysteine proteinases 171 488 - -
Apr5g1339 736 SUPERFAMILY Cysteine proteinases 171 483 IPR038765 -
Apr5g1339 736 CDD Peptidase_C19E 174 479 - -
Apr5g1339 736 SUPERFAMILY HIT/MYND zinc finger-like 60 105 - -
Apr5g1339 736 Pfam MYND finger 63 100 IPR002893 -
Apr5g1339 736 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 677 - -
Apr5g1339 736 ProSiteProfiles Zinc finger MYND-type profile. 63 100 IPR002893 -
Apr5g1339 736 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 19 677 - -
Apr5g1339 736 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 176 191 IPR018200 GO:0004843|GO:0006511
Apr5g1339 736 ProSitePatterns Zinc finger MYND-type signature. 63 100 IPR002893 -
Apr5g1339 736 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 175 481 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1339 Apr-Chr5 17640536 17646556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1339 5 515 Miscellaneous Gene Families AT4G31670 63.405 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1339 K11855 - gmx:100817913 1158.28