LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g1335	ATGAATGACTCACTGAAAGCAGCTGCACAAGTGGGAGACATAGACTTGCTCTACAAACTCATTCAGATGGAACCATATCTCTTAGAACACACTGATTTGATACCCTTTGTTGATACCCCTTTGCACATTGCTGCAGCTGCTGGGCATGCAAGTTTTTCGACTGAGATCCTGAGACTCAAACCTTCATTTGCATGGAAGCTGAATCAGTATGGGCTTAGCCCCATGCACCTTGCTTTGCAAAACAAGCATTATAGAATGGTGTATCGCTTTGTAGACATCAATAAAGAGCTTGTTAGAGTGAAAGGGAGAGAGGGTCTTACTCCTTTGCATTTTGCAACTCAAAGTGGAAAACTTGATGTTGTGGTCAAATTCTTATCAGCATGTCCAAGTTCTATTGAAGATGTCACTGTTAAAAGTGAAACTGCCTTGCATATTGCTGTGAAATATAATCAGTTTCAGGCTCTTGAGGTATTGGTTGGATGGCTTCAGAGGAACTGTCAAAAACATGCAAAGGACCAAGAAAAACATGTGCTGAACTGGAAGGATGAGGCAGGCCACACCATTCTTCACCTTTCAGTTCTCAGAGGCTTCTCACAGGCAGTTAGATTATTAATTGAAAGCAACATAGACATAAATGCGAAGAACATAGATGACTCAACAGTGTTGGACATAGTGGAGACTCAGACTCACTCTTACAGCCCAGAGATGAAAAACATGTTAGTTCAACGTGGAGCTTTGCGTGGTTTTTCACTTGCTACATCTCCACTCCTTGAACAGGAGCTAAGAGCCAAAATCACACTAGATGAGAGAATAGCAATTTGTGTCACTCGTCTCAGAAGGAGAATATCAAATGACACACGCAATGCATTGTTGATAGTTGCTATTTTCTTCGCAACTAGCACATATGAAGCAGCACTTAACCCCCCGGAAAGCGTTGGAAAAGTGGTGATGCAAGTTCAAGCATTCTTTTGGTTCTGGGCATTCAATACTTGTTCCTTTTATATGTCAATTTTGATGATATGCTTGCTTATGCCAAGAGGGCGCATAAGCGTTATTGTGACTTCTCCACTTTTAATCTTTTCTGGGTGCTACGTGTTTTCCATGCTTTTAATATCACCAAGCCTTAGTTTAACCATTGCCACCTGGATTGTGCCATGCATACTAATAGTATTGTACTGTTGGGGAGCTTCAATATATGTTAGATTAGCCAAAAAGCTTAAAATGTATGGATGCAAACTAGAAGACAAATCAAAGTTTGCTGGAGGAAACAGATGGTAA	1278	0.4085	MNDSLKAAAQVGDIDLLYKLIQMEPYLLEHTDLIPFVDTPLHIAAAAGHASFSTEILRLKPSFAWKLNQYGLSPMHLALQNKHYRMVYRFVDINKELVRVKGREGLTPLHFATQSGKLDVVVKFLSACPSSIEDVTVKSETALHIAVKYNQFQALEVLVGWLQRNCQKHAKDQEKHVLNWKDEAGHTILHLSVLRGFSQAVRLLIESNIDINAKNIDDSTVLDIVETQTHSYSPEMKNMLVQRGALRGFSLATSPLLEQELRAKITLDERIAICVTRLRRRISNDTRNALLIVAIFFATSTYEAALNPPESVGKVVMQVQAFFWFWAFNTCSFYMSILMICLLMPRGRISVIVTSPLLIFSGCYVFSMLLISPSLSLTIATWIVPCILIVLYCWGASIYVRLAKKLKMYGCKLEDKSKFAGGNRW*	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g1335	425	ProSiteProfiles	Ankyrin repeat region circular profile.	104	125	-	-
	Apr5g1335	425	PRINTS	Ankyrin repeat signature	105	120	IPR002110	GO:0005515
	Apr5g1335	425	PRINTS	Ankyrin repeat signature	200	214	IPR002110	GO:0005515
	Apr5g1335	425	ProSiteProfiles	Ankyrin repeat profile.	184	216	IPR002110	GO:0005515
	Apr5g1335	425	PANTHER	ANKYRIN REPEAT PROTEIN	311	391	-	-
	Apr5g1335	425	PANTHER	ANKYRIN REPEAT PROTEIN	10	311	-	-
	Apr5g1335	425	SUPERFAMILY	Ankyrin repeat	6	230	IPR036770	-
	Apr5g1335	425	ProSiteProfiles	Ankyrin repeat region circular profile.	184	215	-	-
	Apr5g1335	425	Pfam	Domain of unknown function	284	369	IPR026961	-
	Apr5g1335	425	Gene3D	-	1	253	IPR036770	-
	Apr5g1335	425	ProSiteProfiles	Ankyrin repeat profile.	104	125	IPR002110	GO:0005515
	Apr5g1335	425	PANTHER	HOMEOBOX PROTEIN WARIAI	311	391	-	-
	Apr5g1335	425	PANTHER	HOMEOBOX PROTEIN WARIAI	10	311	-	-
	Apr5g1335	425	Pfam	Ankyrin repeats (3 copies)	99	171	IPR002110	GO:0005515
	Apr5g1335	425	SMART	ANK_2a	104	134	IPR002110	GO:0005515
	Apr5g1335	425	SMART	ANK_2a	184	213	IPR002110	GO:0005515
	Apr5g1335	425	SMART	ANK_2a	70	99	IPR002110	GO:0005515
	Apr5g1335	425	SMART	ANK_2a	138	170	IPR002110	GO:0005515
	Apr5g1335	425	SMART	ANK_2a	36	65	IPR002110	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g1335	Apr-Chr5	17607612	17609618	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr5g1335	4	399	Miscellaneous Gene Families	AT5G15500	38.278	7.37e-85	265

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g1335	-		-	gmx:100790227	647.121