Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1316 ATGAAGTTTATGAAGTTGGGTTCCAAGCCTGATTCTCTTCATGCTGAAGGAAAGTCTATCAGGTATGTGTCGTCTGAATTGGCAACAGATGTTACCATTAATGTTGGTGAAGTGAAGTTTTACCTTCACAAGTTCCCTCTACTGTCTAAGAGCAGCCGCCTCCAGAAATTGGTATCACAAGCTAATGAAGAGAATTCTGATGATATTTACTTGGATGATTTCCCCGGAGGGCCTAAGGCCTTTGAAATATGTGCAAAATTCTGTTATGGAATGACTGTAACTCTCAATGCTTACAACGTTGTAGCTGCTCGTTGTGCTGCTGAGTACCTTAAGATGACTGAGGACGTTGATAGAGGAAACTTAGTTTTAAAGATTGAGGTGTTTCTCAACTCAAGTATCTTGCGTCGCTGGAAGGATTCTATAATTGTTCTCCAAACTTCTAAATCTCTTCTTCCATGGTCTGAGGATCTAAAGATCACTGGAAGATGCATAGATTCCATAGCTTCGAAAACTAGTGTAGACCCTGCATACATCACTTGGTCTTACACTTATAATAGGAAGCTAACTGAACCAGATAAAATTGTTGAGGACAAGTTGTCGTTTCTAGAGAAAATTGAGTCTGTTCCTAAGGATTGGTGGGTTGAAGATATATGTGAGCTGGACATTGATCTTTACAAACGAGTAATGGTTGCCGTGAAATCAAAGGGAAGAATGGATGGAGTAGTGATTGCAGAGGCTCTTAAAACCTATGCATTAAGATGGATACCTGATTCTGTTGATGCATTGGTTTCTGATGCCAATGCATCAAGGAACAAATCTGTGGTAGAGACAATAGTCTGTTTATTGCCATGTGATAATGTCGTGGGTTGTTTGTGTAGTTTCTTGCTGAAGCTTTTGAGAGTGGCCATACTAGTTGGAGCATGTGAGTCATCGAGAGAAGAATTGATGAAGAGCATTAGCCTAAAATTGCATGAAGCTTGTGTCAAAGATTTATTGATTCCAGCAAGGTCTCCCCAGATTACCACATATGATGTTCATTTGGTACAAGGTCTTCTGAATCGATACATGGATCATGAGATGGGAGGCTGCAGTGTAGAGGTTGCTGAGGACAAAGATAGAGGAAAAGAAAAGTATATTTTGGCACATAGATCCTTGTTGAATGTTGGCAAGTTGGTGGATGGTTATCTTGGAGAAATTGCGCATGATCCTAATCTCAGTCTCTCTAGTTTTGTTGATTTGTCACAATCAATTCCAAGTTTTGCAAGATCAGATCACAACGGTCTGTACAGAGCTATTGACATCTATTTGAAGGAGCACCCAGACTTGACAAAAGCTGAAAGGAAGAAACTATGTGGACTAATGGATGTTCGGAAATTGACAGTAGATGCTTCCATGCATGCTGCACAGAATGAACGCCTTCCTCTTCGAGTTGTAGTACAAGTTCTCTTCTTTGATCAGGTCAGAGGTTCTGCCAGTTTTCATGCACTTGGTAACAACAATTCACTTGATCATCCTTCACACACACTGATGAATGGAGATGTGGAATGTGAGAAAACAGTGGAAGATAGCTGCCAATCCCTGAAGAACCATATGAGTCATTTGAGGATTAAAGATGAAGGGTTGCATAAAAATGGGAAACTGAGTAAGAAGAATAACAAAAACAGCAAAAGTGGCATTCAGTTGCTGCCGTCCCGATCGAGGAGAATCTTTGATAAGCTATGGAGTATGAGAAAAGGACAAGGAGAGAATAGGAGCTCCGAAACTTCAGCAAGTTCTGGTAGCCCATCTTCTTTTGGCCATGGAGATGGCAAATCATCTAGTTTATCTTTGAGACACCAGAGGCATTCTATCTCTTAA 1857 0.406 MKFMKLGSKPDSLHAEGKSIRYVSSELATDVTINVGEVKFYLHKFPLLSKSSRLQKLVSQANEENSDDIYLDDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLKMTEDVDRGNLVLKIEVFLNSSILRRWKDSIIVLQTSKSLLPWSEDLKITGRCIDSIASKTSVDPAYITWSYTYNRKLTEPDKIVEDKLSFLEKIESVPKDWWVEDICELDIDLYKRVMVAVKSKGRMDGVVIAEALKTYALRWIPDSVDALVSDANASRNKSVVETIVCLLPCDNVVGCLCSFLLKLLRVAILVGACESSREELMKSISLKLHEACVKDLLIPARSPQITTYDVHLVQGLLNRYMDHEMGGCSVEVAEDKDRGKEKYILAHRSLLNVGKLVDGYLGEIAHDPNLSLSSFVDLSQSIPSFARSDHNGLYRAIDIYLKEHPDLTKAERKKLCGLMDVRKLTVDASMHAAQNERLPLRVVVQVLFFDQVRGSASFHALGNNNSLDHPSHTLMNGDVECEKTVEDSCQSLKNHMSHLRIKDEGLHKNGKLSKKNNKNSKSGIQLLPSRSRRIFDKLWSMRKGQGENRSSETSASSGSPSSFGHGDGKSSSLSLRHQRHSIS* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1316 618 MobiDBLite consensus disorder prediction 537 562 - -
Apr5g1316 618 Gene3D Potassium Channel Kv1.1; Chain A 4 125 IPR011333 -
Apr5g1316 618 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Apr5g1316 618 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 5 597 IPR029961 GO:0060918|GO:0099402
Apr5g1316 618 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
Apr5g1316 618 PANTHER OS12G0117600 PROTEIN 5 597 IPR043454 -
Apr5g1316 618 CDD BTB_POZ_NPY3-like 21 124 - -
Apr5g1316 618 Pfam BTB/POZ domain 25 114 IPR000210 GO:0005515
Apr5g1316 618 SUPERFAMILY POZ domain 22 116 IPR011333 -
Apr5g1316 618 SMART BTB_4 29 127 IPR000210 GO:0005515
Apr5g1316 618 MobiDBLite consensus disorder prediction 576 618 - -
Apr5g1316 618 Pfam NPH3 family 211 464 IPR027356 -
Apr5g1316 618 MobiDBLite consensus disorder prediction 579 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1316 Apr-Chr5 17488676 17493003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1316 8 487 EF-hand Containing Proteins AT3G44820 33.858 2.22e-90 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1316 - - gmx:100784205 973