Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1314 ATGGGTCACGTTGGTTCCAGCACGGACGGAACCATGGCTGGAACAAACCCTGGAACAAACGGCATGGACATCGACGACGACGAGCTCGACCTCGAACCCACCAATGCTGAAATTCTCGAAGAGTTGGGAGAAGATATGGTTAGGTATTTCTGCAAGAAGGCTTCGATGTTGTTCTTTGATCAATACGGTTTGATCAGTCACCAGATCAATTCCTACAACTATTTCATCTCCACTGGCCTTCAGAGTTCCTTCGATTCCTTCGGGGACCTCATTGTTACGCCTGGATTCGATCCTTCCAAAAAAGGAGACAACGAACACTACCGTTACGCTTCTGTTAAGTTCGGGAAGGTAACCCTCGATAAGCCTAAGTTCTGGGGCGGTGAAGGGAATGCTCAAGAGTTTAAGATGCTTCCTAGGCACGCTCGCCTTCAGAGGATGACTTATTCTTCCAAAATGAAAATCAATGTTCAAGTTCAGGTGTATGTTCCAAAGAAGGTTCGGAGTGATAAATTTAAGACGGGTAAAGAGGAATATCTTGATAGAGAGGTTCTCAAGGAGGATAATAGGGAAATCATTATTGGGAGGTTGCCTGTTATGGTCAAGTCTGATCTATGTTGGATGAAAGGGGCTGAAAAGGATGATTGTGAATTTGACCATGGAGGTTACTTTTTGATCAAGGGTGCTGAGAAGACTTTTATTGCACAGGAACAACTCTATTTAAAGAGGCTATGGGTTTTAAGTACTCCATATTGGATGATTGCGTGCAAGTCACAGATGAAGAGAAATAGGATGGTCATTAAGCTGGTAGGGAATTCCAGGATTGAAGAAGTTAAGCACGGAGACAAAATACTTACTGTATATTTTTTGTCTGTTGAGGTTCCTGTATGGATACTCTTTTTTGCTCTTGGTTTGTCGTCTGACAAAGAGGTTATAGATCTAATTGATTGTGGCAATGATGATGCCAGAATTCAGAATATTCTCTCTGCATCCGTTCGTGACGCTGATGAGAAATTTGAAGCCTTTCGGAAAGGGAGGAACGCACTTAATTATTTAGAGGAACATGTTAAAGGTGTCCAATTTCCACCTTCAGAGTCTATTGACGAGTGCCTTAGCACATATGTCTTTCCTGGCATTAGAGGCTTGAATAGAAAGGCACGCTTCCTTGCGTATATGGTGAAGGGTCTCTTACTGGCTTATACTGGCCGCAGAAAATGTGATAACAGGGATGATTTTCGAAATAAGAGGCTTGAATTGGCTAGTGAGCTGCTTGAGCGCGAGCTAAAAGTGCACATTGCACATGCTAGGAAGCGAATGGCAAAGGCTTTGCAGAGAGACCTTTATGGAGATCGTGATGTACGCCCTATTGAGCACTATCTCGATGCTTCAATAATTACAAATGGTTTGCAAAGAGCATTTTCGACTGGAGCATGGTCACATCCATATAAGAGGTTGGAAAGGATCTCGGGTGTGGTTGCAAATGTTGGGCGCACTAATCCCTTACAAACCATGGCCGAGCTAAGAAGAACAAGACAGCAGGTTCAGTATACGGGAAAAGTTGGGGATGCTAGATACCCGCATCCTTCCCACTGGGGCAAGGTTTGTTTTCTCTCTACCCCGGATGGTGAAAATTGTGGACTAGTAAAAAATTTGGCTGTCACAGGACTAGTAAGCACTGATATATCTGAATCTATAATGCCTCAATTGTTTGATTGTGGAATGGAAGAGCTTGTAGATGATACTTCCACTTATCTTGGCAACAAGGACAAAGTCTTCCTAAATGGGGATTGGGTTGGGGTTTGTCCTGATTCCAGTTCATTCGTGGCAGAGCTACGAAGTAAAAGAAGAAGAAACGAATTGCCTCATCAGGTGGAAATCAAGAGAGATCAATCTCAACATGAAGTGCGCATATTCTCTGATGCAGGAAGGATTCTACGTCCACTTTTGGTAGTTTGTAATCTACTCAAAATTAAAGGGTTTAAATCAGAGCGTTACTCTTTCGAGGCCCTATTGGATAATGGTGCGATTGAGCTGATTGGACCTGAAGAAGAGGAAGACTGCTGTACGGCCTGGGGTGTCCAGTATTTATTTGGAAAAGAGGGAAAACGTTCTGTAAAGTACACACACTGCGAGCTTGATATGTCATTCTTATTGGGTTTAAGCTGTTCACTTGTACCATTTGCTAATCATGACCATGCTAGGAGAGTACTCTACCAGTCTCAGAAGCACTCTTCACAGGCTATTGGCTTTTCTACAACAAACCCAGACATTAGAGTTGATACTCTGTCTCACCAGTTACACTATCCCCAAAAGCCCCTTTTTCATTCGATGACTTCTGATTGTCTAGGACAACCCGGATATCCACTGGGTAAAAAAGATAATATACTTCCAAAGGCAGAATTCTATAATGGGCAGAACGCAATTGTGGCAGTCAATGTACATCTGGGATACAATCAAGAGGATTCCCTGGTAATGAACCGTGCTTCTTTGCAGCGTGGAATGTTCAGATCTGAGCACATAAGGAGTTACAAAGCCGAAATTGAAAATAAGGAATCTTCGGAGAAGAAGCGAAAACCTGAAGACATTGTAAATTTTGGAAAGGTACAAAGTAAAATTGGTCGAGTTGATAGCCTTGATGATGATGGCTTTCCATATGTTGGGGCAAACTTGCAAAGTGGTGATATTATTATTGGGCGTGGTGCTGATTCTGGAGCAGACCATAGTGTAAAGTTAAAACACACTGAAAAGGGTTATGTTCAAAAGGTTGTGCTGTCTTCAAATGATGAGGGAAAAAATTTTGCTGTGGTTTCATTAAGACAGGTGCGAAGTCCAGTTCTTGGGGACAAGTTCTCCAGTATGCACGGACAAAAGGGTGTTTTGGGATTTCTGGAGTCTCAGGAAAATTTTCCTTTCACAAGACAAGGAATTGTTCCGGATATTGTCATTAATCCACATGCATTTCCCTCACGACAAACACCTGGGCAACTTCTAGAGGCAGCTTTAGGAAAGGGGATTGCTTGTGGTGGTTCACTGAGACATGCTACTCCTTTCTCCACTCCTTCTATTGACGCCATTACTGACCAACTTCACAGAGCTGGGTTTTCAAGATGGGGAAATGAGAGGGTATACAATGGGAGGACTGGTGAGATGGTCCGATCACTCATTTTTATGGGGCCAACGTTTTACCAACGTCTACATCATATGTCTGAAGACAAAGTGAAATTCAGGAACACTGGTCCAGTGCACCCGTTGACCCGACAGCCTGTAGCTGATAGAAAACGATTTGGAGGTATCAAATTCGGAGAAATGGAGCGTGATTGCTTGATAGCCCATGGTGCATCAGCCAACTTGTATGAACGCCTCTTTACACTTAGTGATTCCTCTCAGATTCACATCTGCAGCAAATGCAAAAATGCTGCAAATGTGATCTTACGGCCTGTGTCAGGTGGCCGGAAAATACGAGGGCCTTATTGCCGCCACTGTGAATCTGCTGATGACATTGTGGTGGCCAATGTCCCGTACGGAGCAAAATTATTATGCCAGGAGCTTTTTAGCATGGGTATAAATCTTAAATTTGAAACCCAACTTTGTTAG 3591 0.4322 MGHVGSSTDGTMAGTNPGTNGMDIDDDELDLEPTNAEILEELGEDMVRYFCKKASMLFFDQYGLISHQINSYNYFISTGLQSSFDSFGDLIVTPGFDPSKKGDNEHYRYASVKFGKVTLDKPKFWGGEGNAQEFKMLPRHARLQRMTYSSKMKINVQVQVYVPKKVRSDKFKTGKEEYLDREVLKEDNREIIIGRLPVMVKSDLCWMKGAEKDDCEFDHGGYFLIKGAEKTFIAQEQLYLKRLWVLSTPYWMIACKSQMKRNRMVIKLVGNSRIEEVKHGDKILTVYFLSVEVPVWILFFALGLSSDKEVIDLIDCGNDDARIQNILSASVRDADEKFEAFRKGRNALNYLEEHVKGVQFPPSESIDECLSTYVFPGIRGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELASELLERELKVHIAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRLERISGVVANVGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTDISESIMPQLFDCGMEELVDDTSTYLGNKDKVFLNGDWVGVCPDSSSFVAELRSKRRRNELPHQVEIKRDQSQHEVRIFSDAGRILRPLLVVCNLLKIKGFKSERYSFEALLDNGAIELIGPEEEEDCCTAWGVQYLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPDIRVDTLSHQLHYPQKPLFHSMTSDCLGQPGYPLGKKDNILPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIENKESSEKKRKPEDIVNFGKVQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRGADSGADHSVKLKHTEKGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSLRHATPFSTPSIDAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNAANVILRPVSGGRKIRGPYCRHCESADDIVVANVPYGAKLLCQELFSMGINLKFETQLC* 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1314 1196 Pfam RNA polymerase Rpb2, domain 7 1095 1193 IPR007641 GO:0003677|GO:0003899|GO:0006351
Apr5g1314 1196 Pfam RNA polymerase Rpb2, domain 6 721 1093 IPR007120 GO:0003677|GO:0003899|GO:0006351
Apr5g1314 1196 Pfam RNA polymerase Rpb2, domain 5 666 712 IPR007647 GO:0006351
Apr5g1314 1196 Gene3D - 722 1079 IPR037033 GO:0003677|GO:0003899|GO:0006351
Apr5g1314 1196 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 48 1193 - -
Apr5g1314 1196 Gene3D - 406 590 - -
Apr5g1314 1196 Gene3D - 57 239 - -
Apr5g1314 1196 Pfam RNA polymerase beta subunit 63 454 IPR007644 GO:0003677|GO:0003899|GO:0006351
Apr5g1314 1196 MobiDBLite consensus disorder prediction 1 18 - -
Apr5g1314 1196 Pfam RNA polymerase Rpb2, domain 2 274 417 IPR007642 GO:0003677|GO:0003899|GO:0006351
Apr5g1314 1196 Gene3D RNA polymerase Rpb2, domain 2 247 405 IPR037034 GO:0003677|GO:0003899|GO:0006351
Apr5g1314 1196 CDD RNA_pol_B_RPB2 64 1192 IPR015712 GO:0003899|GO:0006351|GO:0032549
Apr5g1314 1196 Pfam RNA polymerase Rpb2, domain 3 496 553 IPR007645 GO:0003677|GO:0003899|GO:0006351
Apr5g1314 1196 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 33 1193 IPR015712 GO:0003899|GO:0006351|GO:0032549
Apr5g1314 1196 Gene3D RNA polymerase alpha subunit dimerisation domain 1080 1194 - -
Apr5g1314 1196 MobiDBLite consensus disorder prediction 1 27 - -
Apr5g1314 1196 Pfam RNA polymerase Rpb2, domain 4 590 650 IPR007646 GO:0003677|GO:0003899|GO:0006351
Apr5g1314 1196 ProSitePatterns RNA polymerases beta chain signature. 946 958 IPR007121 GO:0003677|GO:0003899|GO:0006351
Apr5g1314 1196 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 33 1193 - -
Apr5g1314 1196 Gene3D - 752 942 IPR014724 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1314 Apr-Chr5 17476674 17482400 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1314 - K16252 gmx:100779425 2168.66