Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1308 ATGGAGGAAGACGAAATAGTTGGATACGTTACTGCGTACCTTAAGAAAAAAGGGTTTACGCAAACGGAGAAGATTTTCCAGGAAGAATTTCAACACAACAAGTCCAATTCCTCTGCTACTTCTCTTCTCGAACCCGACATTGCCAATCATCTCCTTGCCTTCTCTCAATTGGAGAGTGGTCCTGCCAGGTTTCATGATGGATATAGCAAACTACGATCGTGGACTTATTCTTCTCTGGATTTGTATAAGCACGAGTTGCTTCGTGTACTTTATCCAGTGTTTATACATTGCTTTATGGATCTTGTGGCAAAGGGACATATTCAGGAAGCTCGGAACTTTTTCACTACCTTTCGTGAAGACCATGAAATGATGCACTTGCGTGACCTTCAAAAGCTGGAAGGTGTTCTTTCTCCTACTCATCTGGAGGAAATGGAGTTCGCTCATGCACTTAGGCAGAGCAAATTCAACATAAAGATATGCGAGTATTCCTACGAACTTCTGTTGCAACATCTACACAGTACACAATCCACCACCATACTTGGTATTATCAATGAGCATATTAACTTTCAAGTTACTCCTGGACAACCTAGCTTGATTTCTGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCTAACCGGATAAATCAAAAAGAAATTCATTGGGGGTTACTTGAAGACTCTCTAGAAGAAAGACTGGAGAAGGCTGGGGCTTTGCTTTCAGACTCTGAAAAGGGTGAAGGGGAAACAAAAGAGGGGGAGAATGATGAGAGTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGCTTCAGTCAAAAAAGTAAAAAAGGACAAAGGTGGAGGTGCAACCGGAAAGGGTGCCAAATCTGAAGCTAACACTGTACCTGCTGCACCTCGAGTTAACCCAACTGAGGTAGAGCAGTCCATCCTTGAGGATTTAAGGAACCGTGTACAGCTTAGCAATGTTGCATTGCCATCAGTTAGCTTTTACACATTTATCAATGCGCATAATAGTTTAAGCTGTTCATCAATATCCCATGATGGATCATTAGTTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACCCACCAGTTCTCTTTCACAGGGTGAGAATGACACATCACAAAATGAACAAATGTTCGGGCAAAGTGGCAGCAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGGCCTGTTTATGCAGCATCTTTTAGTCCTGTTGGGGATTTTATTCTTTCATCCTCAGCAGACTCAACAATTCGATTATGGAGCACAAAACTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTATCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCCTCGCATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCTTTAAGAATAATGGCTGGGCATTTGTCTGATGTTGATTGCGTGCAATGGCATGCCAACTGCAACTACATCGCAACAGGTTCCATTGACAAAACAGTTCGACTCTGGGATGTGCAGAGTGGTGAGTGCGTCCGGGTTTTCGTTGGTCACAGGGGTATGATTTTAGCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCCGGTGACGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACACCTTTGATTGGTCACACGTCATGTGTCTGGTCACTTGCTTTCAGTTCTGAAGGTTCTGTTCTAGCATCTGGATCTGCTGATTGCACTGTAAAATTATGGGATATAAATACGAGCACCAAGGTTTCAAGGACTGAAGAAAAGAGTGGGAATGCTAACAGACTCAGATCACTGAAAACTCTGCCAACCAAATCTACTCCAGTTTACTCTTTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCTGCTGGAGCTCTAGCAAAAACTTGCTGA 1983 0.4352 MEEDEIVGYVTAYLKKKGFTQTEKIFQEEFQHNKSNSSATSLLEPDIANHLLAFSQLESGPARFHDGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFTTFREDHEMMHLRDLQKLEGVLSPTHLEEMEFAHALRQSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANRINQKEIHWGLLEDSLEERLEKAGALLSDSEKGEGETKEGENDESKKRSIEGGKQGASVKKVKKDKGGGATGKGAKSEANTVPAAPRVNPTEVEQSILEDLRNRVQLSNVALPSVSFYTFINAHNSLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGQPTSSLSQGENDTSQNEQMFGQSGSKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSIDKTVRLWDVQSGECVRVFVGHRGMILALAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSVLASGSADCTVKLWDINTSTKVSRTEEKSGNANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALAKTC* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1308 660 Pfam WD domain, G-beta repeat 445 480 IPR001680 GO:0005515
Apr5g1308 660 Pfam WD domain, G-beta repeat 406 438 IPR001680 GO:0005515
Apr5g1308 660 Pfam WD domain, G-beta repeat 526 564 IPR001680 GO:0005515
Apr5g1308 660 Pfam WD domain, G-beta repeat 485 522 IPR001680 GO:0005515
Apr5g1308 660 Pfam WD domain, G-beta repeat 568 606 IPR001680 GO:0005515
Apr5g1308 660 Pfam WD domain, G-beta repeat 339 369 IPR001680 GO:0005515
Apr5g1308 660 SUPERFAMILY WD40 repeat-like 331 658 IPR036322 GO:0005515
Apr5g1308 660 CDD TAF5_NTD2 61 193 IPR007582 -
Apr5g1308 660 Gene3D TFIID subunit TAF5, NTD2 domain 43 192 IPR037264 -
Apr5g1308 660 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 438 - -
Apr5g1308 660 ProSitePatterns Trp-Asp (WD) repeats signature. 551 565 IPR019775 -
Apr5g1308 660 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 490 527 - -
Apr5g1308 660 ProSitePatterns Trp-Asp (WD) repeats signature. 509 523 IPR019775 -
Apr5g1308 660 ProSiteProfiles Trp-Asp (WD) repeats profile. 574 615 IPR001680 GO:0005515
Apr5g1308 660 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 438 IPR001680 GO:0005515
Apr5g1308 660 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 532 569 - -
Apr5g1308 660 SUPERFAMILY Taf5 N-terminal domain-like 49 192 IPR037264 -
Apr5g1308 660 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 574 609 - -
Apr5g1308 660 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 657 IPR037783 -
Apr5g1308 660 Gene3D - 566 660 IPR015943 GO:0005515
Apr5g1308 660 PRINTS G protein beta WD-40 repeat signature 425 439 IPR020472 -
Apr5g1308 660 PRINTS G protein beta WD-40 repeat signature 509 523 IPR020472 -
Apr5g1308 660 PRINTS G protein beta WD-40 repeat signature 593 607 IPR020472 -
Apr5g1308 660 CDD WD40 406 660 - -
Apr5g1308 660 MobiDBLite consensus disorder prediction 242 288 - -
Apr5g1308 660 ProSitePatterns Trp-Asp (WD) repeats signature. 593 607 IPR019775 -
Apr5g1308 660 PANTHER CANNONBALL-RELATED 2 657 - -
Apr5g1308 660 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 448 482 - -
Apr5g1308 660 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 489 IPR001680 GO:0005515
Apr5g1308 660 MobiDBLite consensus disorder prediction 242 307 - -
Apr5g1308 660 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 370 IPR001680 GO:0005515
Apr5g1308 660 SMART WD40_4 567 606 IPR001680 GO:0005515
Apr5g1308 660 SMART WD40_4 330 369 IPR001680 GO:0005515
Apr5g1308 660 SMART WD40_4 441 480 IPR001680 GO:0005515
Apr5g1308 660 SMART WD40_4 525 564 IPR001680 GO:0005515
Apr5g1308 660 SMART WD40_4 483 522 IPR001680 GO:0005515
Apr5g1308 660 SMART WD40_4 399 438 IPR001680 GO:0005515
Apr5g1308 660 ProSiteProfiles Trp-Asp (WD) repeats profile. 490 531 IPR001680 GO:0005515
Apr5g1308 660 Gene3D - 488 565 IPR015943 GO:0005515
Apr5g1308 660 ProSitePatterns Trp-Asp (WD) repeats signature. 356 370 IPR019775 -
Apr5g1308 660 ProSiteProfiles Trp-Asp (WD) repeats profile. 532 573 IPR001680 GO:0005515
Apr5g1308 660 Pfam WD40 associated region in TFIID subunit, NTD2 domain 59 187 IPR007582 -
Apr5g1308 660 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Apr5g1308 660 Gene3D - 234 487 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1308 Apr-Chr5 17416497 17425413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1308 467 659 Miscellaneous Gene Families AT5G08390 27.461 3.48e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1308 K03130 - gmx:100805953 1181.01