Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1304 ATGGCCACCCGAAGAACTCCATCGTTAACCAAATCCATTTTAACCGCCGTAACTACTTCTAGAGCCTCTCTCTCTCGCTCTCGCTCCGCCAGACTCTTCTCCGCCTTCTCTCCTACTTCGGAGAATGCTATAAATTCCCTTTTTCGGTCGGAGATTATCAACGCACTCGCATCCTCCAATGTCGCTTCCGCCAAGTTCCTCTCCCAATCTTTCACTCGCAGCTTCCACGCCTCTACTCCCTCCTACCGCTCTGCTGCAAATCCTCAGGTAACGCAGACAGAGTTCACTGATATGGCATGGGAGGGTGTTGTGGGTGCTGTTGATGCTGCACGAGTTAGTAAACAACAAATTGTGGAGTCAGAGCACTTAATGAAAGCCCTCTTGGAGCAAAAGGATGGCTTGGCTCGAAGGATATTTACCAAGGCAGGATTGGACAACACGTCAGTTCTACAGGCTACTGATGACTTTATAGCTCAGCAACCTAAGGTTACCGGTGACACAACTGGACCTTTAATGGGTTCGCATTTTAGCTCCATCTTGGACAATGCTCGCAAGTACAAGAAAGAAATGGGTGATGAATATGTGTCTGTGGAGCACCTTTTGCTAGCATTTCATTCTGATAAGAGGTTCGGGCAACAGTTATTTAAGAATCTCCAGCTTAGTGAAAAGACTTTGAAGGATGCTGTACAAGCTGTTCGTGGAAGTCAAAGAGTGACTGATCAAAATCCTGAGGGGAAATATGAAGCATTGGACAAGTATGGAAATGATTTGACCGAACTTGCTAGGCGTGGCAAGCTTGATCCTGTCATAGGTCGAGATGATGAAATTCGGCGCTGTATCCAGATATTGTCAAGAAGAACAAAAAATAATCCAGTTATTATTGGTGAACCTGGTGTGGGGAAAACTGCAATTGCTGAAGGATTAGCTCAACGTATAGTGCGTGGAGATGTTCCAGAACCATTGATGAACCGAAAGTTGATCTCCCTTGATATGGGCTCATTGCTTGCTGGTGCCAAATATCGTGGAGACTTTGAAGAAAGGTTGAAAGCTGTCCTGAAGGAAGTTACGTCATCAAATGGGCAAATCATTTTGTTTATTGATGAAATTCATACCGTTGTAGGTGCAGGGGCTACAAGTGGGGCGATGGATGCTGGGAACTTGCTGAAGCCAATGCTTGGAAGAGGTGAACTTAGATGCATAGGAGCAACTACGCTGAATGAATATAGAAAATATATTGAAAAGGATCCTGCACTTGAACGTAGATTTCAACAGGTGTTTTGCAGTCAACCATCTGTTGAAGACACAATATCCATTCTCCGTGGGTTGCGTGAACGCTATGAGTTGCATCATGGAGTTAAAATATCAGATAGTGCACTTGTTTCAGCTGCTGTTCTTGCAGATCGATACATCACAGAGCGCTTCTTACCTGACAAAGCTATTGATCTTGTCGATGAAGCTGCTGCAAAGCTGAAGATGGAGATCACGTCTAAGCCTACAGAATTGGATGAGATAGATAGGGCAATATTGAAATTGGAGATGGAAAAACTCTCTTTGAAAAATGACACTGACAAGGCATCTAAAGAAAGATTAAGTAAGCTCGAAAATGATTTGAGTTTACTTAAGCAGAAGCAAAAGGAATTGACAGAACAATGGGACAATGAAAAAGTTTTTATGAATAGGATAAGATCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCAGAGCGTGATTATGATCTAAACCGTGCTGCTGAGCTTAAGTATGGAACCTTGATGTCCCTTCAGCGCCAATTAGAAGAAGCTGAAAAGAACCTAGCTGACTTTCGAAACTCTGGACAATCTTTACTTCGAGAAGAGGTCACTGACCTTGATATTACCGAGATTGTTAGCAAATGGACTGGTATACCATTATCTAACCTCCAACAAACTGAGAGAGAAAAGTTGGTCTTGCTGGAAAAGGTTCTTCATAGGAGAGTGGTTGGTCAGGATATTGCTGTAAAATCTGTGGCTGATGCAATTCGCCGTTCAAGGGCTGGATTGTCTGACCCAAATCGACCAATTGCAAGCTTCATGTTCATGGGACCAACTGGTGTTGGCAAAACTGAGCTTGCCAAGGCTTTGGCTGGCTACTTGTTTAACACAGAAAATGCTCTTGTTAGAATTGATATGAGCGAGTACATGGAGAAACATGCTGTTTCTCGCCTAGTTGGAGCCCCTCCTGGTTATGTCGGATATGAAGAAGGTGGTCAGCTAACTGAAGTGGTCCGGAGAAGACCCTACTCTGTGGTACTGTTTGATGAAATAGAGAAGGCACATCATGATGTCTTCAACATCTTGTTACAGTTGTTGGATGATGGAAGGATTACTGATTCTCAAGGAAGGACTGTTAGCTTCACAAATTGTGTTGTGATTATGACCTCAAACATTGGCTCCCATTACATACTTGAAACCCTTCGTAATACACAAGATGATAAAATTGCAGTTTATGATCAGATGAAAAGACAAGTTGTTGAGTTGGCTAGACAAACATTTCGCCCAGAGTTCATGAATCGCATTGATGAATATATTGTTTTCCAGCCTTTGGATTCCGAACAGATCAGCAGAATAGTGGAGCTCCAGATGGAACGAGTGAAAGACAGGCTCAAGCAAAAGAAAATTGATCTTCATTACACTGAAGAAGCTGTTAAACTTCTTGGTGTACTGGGTTTTGATCCAAATTTTGGGGCAAGACCAGTTAAAAGAGTAATACAACAATTGGTTGAAAATGAAATTGCTATGGCAGTTCTGAGGGGAGATTTCAAAGAAGAGGACTCAATCATTGTTGATGCTGATGTGACTCCGTCAGGCAAGGAACATCCGCCTCCAAATAGGTTGCTTATTAAGAAGCTGGACAGCCGTGTTACAGATGCCATGGTTGTCAATGACTAA 2940 0.4289 MATRRTPSLTKSILTAVTTSRASLSRSRSARLFSAFSPTSENAINSLFRSEIINALASSNVASAKFLSQSFTRSFHASTPSYRSAANPQVTQTEFTDMAWEGVVGAVDAARVSKQQIVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATDDFIAQQPKVTGDTTGPLMGSHFSSILDNARKYKKEMGDEYVSVEHLLLAFHSDKRFGQQLFKNLQLSEKTLKDAVQAVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKYRGDFEERLKAVLKEVTSSNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCSQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAILKLEMEKLSLKNDTDKASKERLSKLENDLSLLKQKQKELTEQWDNEKVFMNRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLADFRNSGQSLLREEVTDLDITEIVSKWTGIPLSNLQQTEREKLVLLEKVLHRRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLRNTQDDKIAVYDQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSEQISRIVELQMERVKDRLKQKKIDLHYTEEAVKLLGVLGFDPNFGARPVKRVIQQLVENEIAMAVLRGDFKEEDSIIVDADVTPSGKEHPPPNRLLIKKLDSRVTDAMVVND* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1304 979 CDD AAA 664 812 - -
Apr5g1304 979 Gene3D - 865 953 - -
Apr5g1304 979 Coils Coil 523 550 - -
Apr5g1304 979 ProSitePatterns Chaperonins clpA/B signature 1. 383 395 IPR018368 GO:0005524
Apr5g1304 979 Pfam AAA lid domain 431 533 IPR041546 -
Apr5g1304 979 Gene3D - 238 431 IPR027417 -
Apr5g1304 979 SMART AAA_5 287 431 IPR003593 -
Apr5g1304 979 SMART AAA_5 690 847 IPR003593 -
Apr5g1304 979 Coils Coil 561 581 - -
Apr5g1304 979 Pfam Clp amino terminal domain, pathogenicity island component 106 157 IPR004176 -
Apr5g1304 979 Pfam Clp amino terminal domain, pathogenicity island component 183 234 IPR004176 -
Apr5g1304 979 CDD AAA 270 427 - -
Apr5g1304 979 Pfam ATPase family associated with various cellular activities (AAA) 293 426 IPR003959 GO:0005524|GO:0016887
Apr5g1304 979 ProSitePatterns Chaperonins clpA/B signature 2. 724 742 IPR028299 -
Apr5g1304 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 638 IPR027417 -
Apr5g1304 979 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 694 712 IPR001270 GO:0005524
Apr5g1304 979 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 739 757 IPR001270 GO:0005524
Apr5g1304 979 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 768 786 IPR001270 GO:0005524
Apr5g1304 979 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 801 815 IPR001270 GO:0005524
Apr5g1304 979 SUPERFAMILY Double Clp-N motif 94 245 IPR036628 -
Apr5g1304 979 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 95 948 IPR017730 GO:0005737|GO:0009408|GO:0042026
Apr5g1304 979 Gene3D - 642 863 IPR027417 -
Apr5g1304 979 ProSiteProfiles Clp repeat (R) domain profile. 90 235 IPR004176 -
Apr5g1304 979 Coils Coil 501 521 - -
Apr5g1304 979 PANTHER BNAC09G42450D PROTEIN 67 974 - -
Apr5g1304 979 Gene3D - 91 237 IPR036628 -
Apr5g1304 979 Pfam C-terminal, D2-small domain, of ClpB protein 865 945 IPR019489 -
Apr5g1304 979 Coils Coil 588 622 - -
Apr5g1304 979 PANTHER ATP-DEPENDENT CLP PROTEASE 67 974 - -
Apr5g1304 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 945 IPR027417 -
Apr5g1304 979 SMART ClpB_D2_small_2 865 959 IPR019489 -
Apr5g1304 979 Gene3D - 432 637 IPR027417 -
Apr5g1304 979 Pfam AAA domain (Cdc48 subfamily) 689 858 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1304 Apr-Chr5 17363639 17371612 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1304 K03695 - gmx:100782242 1725.29