Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1282 ATGGGTACCGTGTCTCTTCTCAAGTGCTACACACCCTTTTTCTCCATGCTTTTCCCCCACCCAGTTCGAGCCGTTTTCCCCGCTACCCGCGCCGCCATCTTCAGGAGAAAGAACCTTCGTTCTTTCTGCGCTGGCTCATCTCAGCCGTTGACAACGGCGGAGAAGGATTGTAGCAAATCCGACAGCGATAGGCTCACGTTGACGAATCCATTGCCGGATGTGTGGCTTCACAACACCATGAGTAAAAAGAAGGAACTCTTCAAACCCAAAGTGGAATCCAAAGTGGGAATGTATGTGTGCGGTGTCACTGCTTATGATCTCAGCCATATTGGTCATGCTCGCGTCTACGTCAATTTCGACCTTCTTTACAGATACTTTAAGCATTTGGGATTTGAAGTCTGTTATGTTCGCAATTTCACTGATGTAGATGACAAGATAATTGCTCGAGCAAAGGAGTTAGGAGAAGATCCACTCAGTTTGAGCCAGCGCTACTGTGATGAGTTCTGTCAAGACATGGAAAATCTAAATTGTCTGCCCCCTTCTGTGGAGCCCAAAGTCTCAGAGCACATGCCACAGATCATTGATATGATACAGAAGATTCTTACAAATGGGTACGCCTACATTGTTGATGGGGATGTTTACTATGATGTAGAAAAATTTCCAGAATATGGGAAACTATCTAGTCGAGATTTAGAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCCAGGGGAGCCATTTTGGGAAAGTCCCTGGGGTCCTGGAAGACCTGGATGGCATATTGAATGCAGTGCCATGAGTGCAGTTTATCTTGGTTACTCTTTTGACATTCATGGTGGAGGGATTGACCTTGTGTTTCCTCATCATGAAAATGAAATTGCTCAGAGCTGTGCTGCATGTAAGAAAAGTGATATAAGTCTATGGATGCACAATGGTTTTGTCACCATTGACTCTGTGAAGATGTCTAAATCTTTGGGAAATTTTTTCACAATCCGGCAGGTTGTAGATGTTTACCATCCGCTGGCATTAAGATATTTTTTGATGAGTGCCCATTATCGGTCTCCTATTAACTACTCCCATATACAGCTTGAAAGTGCTTCAGACCGTGTTTTTTATGTATATGAGACATTACATGAATGTGAAAGCTTTCTGAATCAACATGATCAGACAGTTAGGAAAGATTCCATCCCGACAGATACTTCGAGTATTATTAAAAACTTCCACGATGTTTTTTTTACCTCAATGTCTGATGATCTTCACACTCCAGTTGTGTTGGCTGGACTGTCTGAACCATTAAAATCAATCAATGATTTGCTGCATACTCGGAAGGGGAAAAAACAACAATTTCGAATAGAATCACTCACAGCTTTGGAGAAGAGCATCAGGGGCGTCCTTACTGTTTTAGGACTTATGCCTGCAAGTTACTCTGAGGTTTTGCAGCAGCTTAGGGAAAAAGCTTTAAACCGCGCAAACTTGACAGAAGATGAAGTCTTGCAGAAAATTGAAGTAAGGGATGCTGCAAGAGTACAAAAGGAGTATGCTAAATCAGATGCAATAAGGAAGGATTTGGCTGTTGTTGGTATTACTCTTATGGACAGTCCAAATGGCACAACTTGGAGGCCCACCATTCCTCTTCGCCTTCAAGAGCTACTCTAG 1707 0.43 MGTVSLLKCYTPFFSMLFPHPVRAVFPATRAAIFRRKNLRSFCAGSSQPLTTAEKDCSKSDSDRLTLTNPLPDVWLHNTMSKKKELFKPKVESKVGMYVCGVTAYDLSHIGHARVYVNFDLLYRYFKHLGFEVCYVRNFTDVDDKIIARAKELGEDPLSLSQRYCDEFCQDMENLNCLPPSVEPKVSEHMPQIIDMIQKILTNGYAYIVDGDVYYDVEKFPEYGKLSSRDLEDNRAGERVAVDSRKKNPADFALWKSAKPGEPFWESPWGPGRPGWHIECSAMSAVYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISLWMHNGFVTIDSVKMSKSLGNFFTIRQVVDVYHPLALRYFLMSAHYRSPINYSHIQLESASDRVFYVYETLHECESFLNQHDQTVRKDSIPTDTSSIIKNFHDVFFTSMSDDLHTPVVLAGLSEPLKSINDLLHTRKGKKQQFRIESLTALEKSIRGVLTVLGLMPASYSEVLQQLREKALNRANLTEDEVLQKIEVRDAARVQKEYAKSDAIRKDLAVVGITLMDSPNGTTWRPTIPLRLQELL* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1282 568 PANTHER CYSTEINYL-TRNA SYNTHETASE 73 563 IPR024909 -
Apr5g1282 568 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 412 558 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Apr5g1282 568 TIGRFAM cysS: cysteine--tRNA ligase 76 557 IPR015803 GO:0004817|GO:0005524|GO:0006423
Apr5g1282 568 PRINTS Cysteinyl-tRNA synthetase signature 97 108 IPR024909 -
Apr5g1282 568 PRINTS Cysteinyl-tRNA synthetase signature 133 142 IPR024909 -
Apr5g1282 568 PRINTS Cysteinyl-tRNA synthetase signature 262 280 IPR024909 -
Apr5g1282 568 PRINTS Cysteinyl-tRNA synthetase signature 293 314 IPR024909 -
Apr5g1282 568 Gene3D - 377 558 - -
Apr5g1282 568 CDD CysRS_core 75 376 IPR032678 -
Apr5g1282 568 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 73 563 - -
Apr5g1282 568 Hamap Cysteine--tRNA ligase [cysS]. 74 559 IPR015803 GO:0004817|GO:0005524|GO:0006423
Apr5g1282 568 SUPERFAMILY Nucleotidylyl transferase 76 382 - -
Apr5g1282 568 Pfam tRNA synthetases class I (C) catalytic domain 87 383 IPR032678 -
Apr5g1282 568 Gene3D HUPs 73 376 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1282 Apr-Chr5 17136150 17140530 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1282 K01883 - gmx:100786700 1016.14