Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1279 ATGGGATTCATCAGCGGCATGATCGTTGGTATCGCCATTGGTATCGGATTGATCATCGCTTTCGCTCGTCATGAAAGCGTCCGATCCAAGCATCGCTCCAATTTGGCGAAGATTGTAGCAGAGTTGGCGAGGATGACGGTGGAGGACTCCAGAAAACTTCTACCTCAAAAGTTCTATCCCTCATGGGTGGTCTTCACTCGGAGACAGAAGTTGAGTTCATATAATTGCCTTAATAGCCTACTGAACAAGATTTGGCCTTTTGTTAATGAGGCAGCGTCAGGGTTGATAAAAAGCAGTGTGGAACCCATTCTTGAACAATATAGGCCAATTATTTTGTCTTCTCTCACCTTCTCCAAGTTGACCCTTGGTACTGTGGCTCCACAATTTACAGGAGTTTCAATCGTTGAAGAGGATAGTGGGCCTGATGGGGTGACTATGGAGCTAGAAATGCAGTGGGATGGTAACCCGAATATCGTTCTTGACATTAAAACCAGAGTTGGTGTTGTACTTCCCGTACAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCACTAGTGAATGAGTTCCCTGCTTTTGGAGCTGTTTGTTTTTCCCTGAGAGAAAAGAAAGATCTTGATTTTACTCTTAAGGTTATTGGTGGGGATATATCAGCTTTACCGGGGATATCAGATGCTATAGAGGAAACAATTAAAGATGCCATTGAAGATTCTATAACTTGGCCAGTGCGCAAAATTATACCAATTCTACCTGGGGATTACAGTAATCTAGAGTTGAAACCGGTTGGAACACTAGACGTAAAACTAGTGCAAGCAAAGAACTTAGCAAATAAAGATGTGATTGGGAAATCCGATCCTTTTGCTGTCTTATTTGTACGTCCACTTCGTGACAGAACCAAAACCAGTAAAACAATTAATAACCAGTTGAATCCAGTATGGAATGAGCACTTTGAGTTCACTATTGAAGATGCGTCAACGCAGCACTTGACCATAAGAATTTTCGATGATGAAGGCATTCAGGCTGCAGAGCTTATTGGCTGTGCCCAAGTTGCTCTAAAGGACCTTGAACCTGGTAAAGTCAAGGATGTTTGGTTGAAATTGGTTAAGGATTTGGAGGTTCACAGAGACAATAAATACAGGGGTGAGGTGCAATTGGAGCTTTTGTACTGCCCATATGGAGTTGACAACACCTTCAAGAATCCTTTTGACCCTGATTACTCATTAACCACGTTCGAGAAAACCCTCAAGAGTGGAGCAGAAGTCGCGGAGGCCGAGGATCTTACTGGGTCATCATCAAGGAAGAGAAGCAACGTGATTGTAAGAGGGGTTCTATCTGTGACGGTGATTTCAGCCGAAGATTTGCCAGTAGCAGACTTAATGGGCAAAGCTGATCCATTTGTCATCCTTATGTTGAAAAAATCAGAAAAAAAGCTCAAGACCAGAGTTGTAAATGAATCCCTCAACCCAGTTTGGAATCAAACATTCGACTTTGTTGTGGAGGATGGCTTACATGAAATGTTAACTGTTGAAGTCTGGGATCATGATACGTTTGGCAAGGAAAAACTTGGAAGAGTGATCCTGACATTGACTAAGGTCATCTTGGAGGGAGAATACAATGAAACTTTTCCGCTAGATGGAGCTAAATCCGGAAATATCACTTTACATTTGAGGTGGACACCACAGCACAAATTCAGGGATCCTTAG 1716 0.4248 MGFISGMIVGIAIGIGLIIAFARHESVRSKHRSNLAKIVAELARMTVEDSRKLLPQKFYPSWVVFTRRQKLSSYNCLNSLLNKIWPFVNEAASGLIKSSVEPILEQYRPIILSSLTFSKLTLGTVAPQFTGVSIVEEDSGPDGVTMELEMQWDGNPNIVLDIKTRVGVVLPVQVKNIGFTGVFRLIFKPLVNEFPAFGAVCFSLREKKDLDFTLKVIGGDISALPGISDAIEETIKDAIEDSITWPVRKIIPILPGDYSNLELKPVGTLDVKLVQAKNLANKDVIGKSDPFAVLFVRPLRDRTKTSKTINNQLNPVWNEHFEFTIEDASTQHLTIRIFDDEGIQAAELIGCAQVALKDLEPGKVKDVWLKLVKDLEVHRDNKYRGEVQLELLYCPYGVDNTFKNPFDPDYSLTTFEKTLKSGAEVAEAEDLTGSSSRKRSNVIVRGVLSVTVISAEDLPVADLMGKADPFVILMLKKSEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLTVEVWDHDTFGKEKLGRVILTLTKVILEGEYNETFPLDGAKSGNITLHLRWTPQHKFRDP* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1279 571 CDD C2 448 548 - -
Apr5g1279 571 PANTHER SYNAPTOTAGMIN-4 1 570 - -
Apr5g1279 571 PRINTS C2 domain signature 463 475 IPR000008 -
Apr5g1279 571 PRINTS C2 domain signature 489 502 IPR000008 -
Apr5g1279 571 PRINTS C2 domain signature 511 519 IPR000008 -
Apr5g1279 571 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 265 396 IPR035892 -
Apr5g1279 571 SMART C2_3c 268 368 IPR000008 -
Apr5g1279 571 SMART C2_3c 447 545 IPR000008 -
Apr5g1279 571 ProSiteProfiles C2 domain profile. 427 546 IPR000008 -
Apr5g1279 571 Gene3D C2 domain 263 401 IPR035892 -
Apr5g1279 571 Gene3D C2 domain 443 569 IPR035892 -
Apr5g1279 571 CDD C2 269 371 - -
Apr5g1279 571 Pfam C2 domain 446 548 IPR000008 -
Apr5g1279 571 Pfam C2 domain 267 371 IPR000008 -
Apr5g1279 571 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 70 254 IPR031468 GO:0008289
Apr5g1279 571 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 570 IPR045050 GO:0008289
Apr5g1279 571 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 76 253 IPR039010 -
Apr5g1279 571 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 442 565 IPR035892 -
Apr5g1279 571 ProSiteProfiles C2 domain profile. 248 369 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1279 Apr-Chr5 17116248 17122100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1279 448 536 Lipid Metabolism Gene Families AT1G51570 33.708 1.98e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1279 - - gmx:100787972 973.385