Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1277 ATGAAGCAAGCATCTTCTGAGGCAGTTCCTTCTCTATCTTCTGCGCCGTCGTTCACGGAAGCAGCCACATCGTCGTCGTCGTCGTCGGCAGCGGCGGAGGACCTGGCCGTGGGGTCGAGGGACGGAGGCGGCGCTCAGGAGACGGTGGCGGTGGATCGGCGAGGCGAGTTCTCGGCGGTGTGCCGATGGACGGTGCACAATTTTCCTAGAATAAAGGCTAGGGCACTGTGGAGCAAGTACTTCGAGGTAGGAGGTTACGATTGTCGGTTGCTAATATACCCTAAGGGCGACTCACAGGCTCTTCCAGGTTACATCTCTATCTATCTCCAAATCATGGACCCTCGCGGAACCACTTCATCGAAATGGGACTGTTTCGCTAGCTATCGCTTGGCAATCGTCAACGTCGCTGACGATTCCAAAACCATTCATCGCGATTCCTGGCACCGATTCTCAAGTAAGAAGAAATCGCACGGTTGGTGCGATTTCACGCCCTCTTCCACTGTTTTTGATCCCAAATTGGGGTATCTGTTTAACACCGATTCCGTTTTGATCACTGCTGATATTCTTATTCTTAATGAGTCTGTTAATTTCACACGCGATAACAATGAGTTGCAGTCCTCCTCGTCATCGTCGTCTTTGTCCTTGACGTCATCGTCTGGGGTTGCGGGTCCTGTGTCTGACGTCTTGAGTGGGAAGTTCACTTGGAAAGTGCATAATTTCAGTTTGTTTAAGGAGATGATCAAGACGCAGAAGATAATGAGCCCGGTTTTCCCTGCTGGGGAGTGTAATTTGAGGATTAGTGTGTACCAGAGCTCGGTGAATGGGGTTGAGTATCTGTCAATGTGTTTGGAGAGCAAGGATACGGATAAGACTGTGGTGTTGTCTGATAGGAGTTGCTGGTGTTTGTTTAGGATGTCTGTGTTGAACCAGAAGCCTGGTTCCAATCACATGCATAGAGATTCCTATGGCCGGTTTGCGGCTGATAATAAGAGTGGTGACAATACCAGCTTGGGATGGAATGATTACATGAAGATGTCGGATTTCATTGGCCCTGATTCGGGGTTCTTGGTGGATGACACTGCTGTTTTTAGTACCTCGTTTCATGTGATCAAGGAGTTTAGCAGCTTCTCCAAGAATGGGGCTGTGATTGCTGGCAGAAGTGGGAGTGGTGCGAGGAAGTCGGATGGCCATATTGGAAAGTTCACTTGGAGGATTGAGAATTTTACGAGGCTGAAGGATTTGTTGAAGAAGAGGAAAATTACTGGTCTTTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATAGGGATTGTCGTCTTATTGTTTATCCTCGAGGGCAGTCTCAGCCACCCTGTCACCTTTCAGTGTTTCTTGAAGTTACAGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTTAGTCATCGTTTGTCAGTTGTTAATCAGAGGATGGAGGATAAATCTGTCACCAAGGAGTCTCAAAACCGCTACTCCAAAGCTGCAAAGGATTGGGGTTGGCGTGAATTTGTGACGCTTACAAGTCTCTTTGATCAAGATTCAGGTTTTCTTGTCCAGGACACTGTCATTTTCTCTGCTGAAGTTCTTATATTGAAAGAGACATCAATAATGCAGGATTTTACTGAGCATGATTCTGAGTTAAGCAGCAATGGTTCCTCTCTTGATAGTTGTGGGAAAAGAAGTTCATTTACTTGGAAAGTGGAAAATTTCCTGTCTTTTAAGGAAATAATGGAGACTCGAAAAATCTTCAGTAAATTCTTTCAGGCTGGTGGATGTGAACTTCGGATTGGTGTGTATGAGTCGTTTGATACCATATGTATTTATCTGGAGAGTGACCAGGCTGTTGGTAGTGATCCTGATAAAAACTTCTGGGTCAGATACAGGATGGCTGTTGTAAATCAAAAGAACCCAGCCAAGACAGTGTGGAAAGAATCTTCTATCTGCACAAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATGTTAGAAGTAGATGCAGGATTCCTTGTCCGTGACACTGTTGTTTTTGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGACTTGGAGGTTTTAGCATCGGAGGATGACCAGGATGCATTGACAACTGATCCTGATGAACTTATTGACTCTGAAGACAGTGAAGGGATAAGTGGAGACGAGGAAGATATTTTCAGAAATCTTCTTTCCAGAGCTGGATTCCATTTAACGTATGGCGATAATCCTTCACAACCACAGGTTACTTTAAGAGAGAAACTTTTAATGGATGCTGGTGCAATTGCGGGGTTTCTGACTGGACTTCGGGTTTATCTTGATGATCCTGCAAAAGTAAAGCGTCTACTTCTACCTACCAAGCTCTCTGGGAGTTGTGATGGGAAGAAGGCCTCCAAGGCTGATGAGTCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTGCAGCAAGCAATCATTGATTTACTATTGGATATAATGGTTGAGTGCTGCCAACCATCTGAAGTGGGTCCTGTTGCTGATTCTGTTGATGCATGCTCTAAACCTTCTCAGGACGGCGGTGGAGCTGCTAGTCCTCTTGAATGTGATAGAGGAAATGGAGCCACAGAGGCTGCTCAAGTTCCTGTTTATGAGAGATTGGATTCTGTTGCTGAAGAAAGCAATAGTACATCTGCCGTACAGAGCTCTGATTTAAATAGGAATGGTATCCAGGAAAAAGCTCTTCCGGGGCAGCCTATTTGTCCACCGGAGACGTCTGCCACTGCTTCGGAAAATGCATCCTTTCGGTCAAAGACCAAGTGGCCAGAACAGTCTGAGGAGCTCTTAGGTTTGATTGTAAACTCATTAAGAGCTTTGGATGGGGCTGTTCCGCAAGGCTGTCCAGAGCCAAGACGGAGACCTCAATCTGCACAGAAAATTGCTCTTGTATTGGACAAGGCTCCTAAGCATTTGCAAGCAGACCTAGTTGCTCTGGTACCCAAATTGGTTGAGCAGTCAGAACATCCACTGGCTGCTTATGCACTCCTTGAGCGACTTCAAAAGCCAGATGCGGAACCTGCTTTACAAATACCTGTTTTTGGGGCTCTTAGTCAATTGGAATGTGGTAGTGAAGTGTGGGAACGCATTCTGTTTCAGTCGTTTGAGCTTTTGACAGACTCAAATGATGAACCACTTGCTGGAACAATAGATTTTATATTCAAAGCAGCATCTCAATGTCAACACCTCCCTGAAGCAGTTAGATCTGTTCGTGTCAGGCTGAAAAATCTAGGTCTTGAAGTGTCACCTTGTGTCCTTGACTTTTTGAGTAAAACAATAAATAGTTGGGGGGATGTTGCTGAAACCATACTTAGGGACATTGATTGTGATGATGATTATGGTGACAGTTGCTCAGCTCTGCCATGTGGGATTTTCTTATTTGGTGAACATGGTACTGTTCCTACTGGAATGCAAGTGATTGATGAGCAGGCTTTTCGTGCTAGTCGTCATTTTTCTGATATTTATATACTGTTTGAGATGCTATCCATTCCTTGTCTGGCTGTTGAAGCTTCTCAAACATTTGAGAGAGCTGTAGCTCGAGGTGCAATAAGTGCTCAGTCTGTAGCCCTGGTATTGGAAAGTCGTCTTTCCCAAAGATTGAACAATAATGCCAGATATGCTTCTGAAGATTTCCAACATTCAGATGGTGCAACAGAGGGAGATGCTTGTGATCAATTGGGAGTTCAAAGGGATGATTTTACTTCAGTTCTTGGTCTTGCTGAAACTTTGGCCCTCTCTAGAGACCCATGTATTAAAGAATTTGTGAAATTGCTCTACATGATAATGTTTAGATGGTATGCCAATGAATCTTATCGAGGGAGGATGCTGAAGAGGCTTGTTGACCGTGCCACTAGCACTACTGACAATGGTCGTGAGGTAGATTTTGATTTGGATATCTTGGTTACTTTGGTCTGTGAGGAGCAGGAGTTTATTAGGCCTGTTTTGAGTATGATGCGTGAAGTTGCTGAACTTGCAAATGTTGATCGGGCTGCTCTATGGCACCAGTTATGTGCCAGTGAAGATGAAATTATTCGTGTTCGTGAAGAAAGCAAAACTGAGATTTCTAATATGGCTAGGGAAAAAGCTATTATATCACAAAAACTGAGTGAATCTGAGGTCGCAAACAATCGTCTCAAGTCTGAAATGAGGGCTGAGATGGAGCGGTTCTCTTGGGAAAAGAAGGAACTAGCAGAACAAAATCAAGAAGTTGAGAGTCAGCTTGAATGGCTCCGCTCAGAGCGGGATGATGAAATAGCAAAGCTCTCTGCAGAGAAGAAAGCTCTTCATGACCGTTTACATGATGCGGAGGCACAGCTTTCTCAATTGAAGTCTCGAAAACGCGATGAATTGAAGAAAGTGGTCAAGGAGAAAAATGCACTAGCTGAAAGACTGAAGAATGCTGAAGCTGCACGTAAGAGATTTGATGAAGAATTGAAAAGATTTGCAACAGAGAATGTGACTCGGGAAGAAATCCGGCAATCGCTTGAGGATGAAGTTCGTAGATTGACTCAAACAGTTGGGCAAACTGAGGGAGAAAAGAGGGAAAAGGAAGAGCAGGTTGCTAGGTGTGAAGCATACATTGATGGCATGGAATCGAAGTTGCAAGCTTGCCAGCAATATATTCATACACTTGAGGCCTCACTCCAGGAAGAAATGTCACGACATGCCCCTCTGTACGGTGCTGGTCTGGAGGCTCTATCAATGAAAGAGTTGGAAACACTATCACGTATTCATGAAGAAGGGCTGAGGCAGATCCATGCCCTTCAACAGCGTAAAGGGAGTCCTGCTGGGAGCCCTCTTGTGAGTCCCCATGCTCTCCCTCTCAACCATGGATTATATCCAGCTGCGTCCCCCCCAATGGCCGTGGGACTGCCTCCCTCTATCATCCCAAATGGTGTAGGGATCCACAGCAACGGTCACGTGAATGGTGCAGTTGGGCCCTGGTTCAATCACTCTTGA 5034 0.4501 MKQASSEAVPSLSSAPSFTEAATSSSSSSAAAEDLAVGSRDGGGAQETVAVDRRGEFSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTTSSKWDCFASYRLAIVNVADDSKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDPKLGYLFNTDSVLITADILILNESVNFTRDNNELQSSSSSSSLSLTSSSGVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKTVVLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGPDSGFLVDDTAVFSTSFHVIKEFSSFSKNGAVIAGRSGSGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFTEHDSELSSNGSSLDSCGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEVDAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSCDGKKASKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPVADSVDACSKPSQDGGGAASPLECDRGNGATEAAQVPVYERLDSVAEESNSTSAVQSSDLNRNGIQEKALPGQPICPPETSATASENASFRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQADLVALVPKLVEQSEHPLAAYALLERLQKPDAEPALQIPVFGALSQLECGSEVWERILFQSFELLTDSNDEPLAGTIDFIFKAASQCQHLPEAVRSVRVRLKNLGLEVSPCVLDFLSKTINSWGDVAETILRDIDCDDDYGDSCSALPCGIFLFGEHGTVPTGMQVIDEQAFRASRHFSDIYILFEMLSIPCLAVEASQTFERAVARGAISAQSVALVLESRLSQRLNNNARYASEDFQHSDGATEGDACDQLGVQRDDFTSVLGLAETLALSRDPCIKEFVKLLYMIMFRWYANESYRGRMLKRLVDRATSTTDNGREVDFDLDILVTLVCEEQEFIRPVLSMMREVAELANVDRAALWHQLCASEDEIIRVREESKTEISNMAREKAIISQKLSESEVANNRLKSEMRAEMERFSWEKKELAEQNQEVESQLEWLRSERDDEIAKLSAEKKALHDRLHDAEAQLSQLKSRKRDELKKVVKEKNALAERLKNAEAARKRFDEELKRFATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHALQQRKGSPAGSPLVSPHALPLNHGLYPAASPPMAVGLPPSIIPNGVGIHSNGHVNGAVGPWFNHS* 1678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1277 1677 SUPERFAMILY TRAF domain-like 399 540 - -
Apr5g1277 1677 SUPERFAMILY TRAF domain-like 58 196 - -
Apr5g1277 1677 PANTHER TRAF-LIKE FAMILY PROTEIN 28 1677 - -
Apr5g1277 1677 SUPERFAMILY TRAF domain-like 567 691 - -
Apr5g1277 1677 MobiDBLite consensus disorder prediction 1 43 - -
Apr5g1277 1677 ProSiteProfiles MATH/TRAF domain profile. 58 188 IPR002083 GO:0005515
Apr5g1277 1677 PANTHER TRAF-LIKE FAMILY PROTEIN 28 1677 - -
Apr5g1277 1677 MobiDBLite consensus disorder prediction 1 33 - -
Apr5g1277 1677 CDD MATH 231 363 IPR002083 GO:0005515
Apr5g1277 1677 CDD MATH 399 534 IPR002083 GO:0005515
Apr5g1277 1677 ProSiteProfiles MATH/TRAF domain profile. 398 534 IPR002083 GO:0005515
Apr5g1277 1677 MobiDBLite consensus disorder prediction 918 946 - -
Apr5g1277 1677 Gene3D - 1434 1627 - -
Apr5g1277 1677 Coils Coil 1517 1544 - -
Apr5g1277 1677 Coils Coil 1393 1438 - -
Apr5g1277 1677 SUPERFAMILY TRAF domain-like 228 373 - -
Apr5g1277 1677 Coils Coil 1443 1509 - -
Apr5g1277 1677 MobiDBLite consensus disorder prediction 929 945 - -
Apr5g1277 1677 CDD MATH 62 188 IPR002083 GO:0005515
Apr5g1277 1677 Pfam MATH domain 579 686 IPR002083 GO:0005515
Apr5g1277 1677 Pfam MATH domain 67 190 IPR002083 GO:0005515
Apr5g1277 1677 Pfam MATH domain 430 536 IPR002083 GO:0005515
Apr5g1277 1677 ProSiteProfiles MATH/TRAF domain profile. 230 367 IPR002083 GO:0005515
Apr5g1277 1677 ProSiteProfiles MATH/TRAF domain profile. 566 690 IPR002083 GO:0005515
Apr5g1277 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 226 373 IPR008974 GO:0005515
Apr5g1277 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 45 195 IPR008974 GO:0005515
Apr5g1277 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 554 692 IPR008974 GO:0005515
Apr5g1277 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 390 543 IPR008974 GO:0005515
Apr5g1277 1677 SMART math_3 403 515 IPR002083 GO:0005515
Apr5g1277 1677 SMART math_3 571 671 IPR002083 GO:0005515
Apr5g1277 1677 SMART math_3 60 168 IPR002083 GO:0005515
Apr5g1277 1677 SMART math_3 235 348 IPR002083 GO:0005515
Apr5g1277 1677 CDD MATH 568 690 IPR002083 GO:0005515
Apr5g1277 1677 MobiDBLite consensus disorder prediction 856 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1277 Apr-Chr5 17099015 17107890 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1277 - - ccaj:109798115 3108.16