Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1253 ATGGAAAAGCAAAAGCAAAGCGGGAAAAAGCGAGAAAGACACACTGAGAATTTACAGACAACTGAGAACATGGACTTGGAAGGAAGTGAAAAGGATTCAGTGGTTACTCAGGTTAGCATTGGTGGATTTGACAGTGAGGTCACAGCAAGTGATCTTGTGACGTACTTGGAAGATAAAATTGGACTTGTGTACAGATGTCGGTTGAAAACTTCTTGGACCCCTCCAGAGTCTTATCCAGAATTTAATATCATTGATACTGCACAGATTAAAAAAACAGATGTCTATCAGAAGGTTGAGCCTCACGCCTTTGTTCATTTTGCATCACCAGGATCTGTAACTACGGCCCTGAATGCTTCAGGTTGTTGTGATCTATTTTTGAAAAATCAACCATTAAAGGTCAGCCGCGGGCCTGAAAATCCATTCTTCCTGAACCAAAGGAGGAGAACTACAATTCCTTTTAAAATGTCTGATGTACTTGTTGAAATTGGGACTTTGGTTGGCCCAGAGGAGTTTTTTGTTGCTTGGAGAGGACCTGATAAAGGCGTAAAATTTCTAGTGGATCCTTTTGATGGCCAGTGCAAGATTTGTTTCAATAGAGATACTGCATTTTCATTCAAAGGAATAGAAAAAAAAGCTGTGATAAAGTGTGATTTTCAGGTGGGATTCTTGGTTAGAGACATTAATGAGATCAGGAGATATAATGACACATCATATCTCGTTGTTTTATTACACCTAGCTTCATCACCTTGGGTTTGGTACAGAACTGCCGATGATGATATTGAAGAATTAGTCCCATTTGATTTGCTGGATGATGATGATCCTTGGATTAGGACCACTGATTTTACACCTAGTGGGGCAATTGGTCGATGCAATTTTTATAGAATTTCAATCCCTCCTCGCTATGGTGCAAAATTGATGAAGGCTATGCTTTATCTGAAAGGACAAAGAGTGCAAGTGCAAGAAATTCCTCTTCGACGACCACTTAGGATACTGGATGAACCTGATTTTGGGGTGTCCATGTCAGATGCCTTCTTCTATATAAATTTTCAGAAGGGCATTGCCTTTGATATACTGTTCTTGGTCAATGCCATCATACACAAAGGCATATTCAATCAGCACAGGTTGTCAGATAGGTTTTTTGAATTGCTGAGAAATCAACCTATGGAGCTTAATGTGGCTGCCCTGAAGCATTTATGTTCTTACAAACGTCCAGTGTTTGATGCAACCAAGAGGCTAAAAACAGTCCAAGATTGGTTGCTCAGAAATCCTAAACTTTATCAGGGTTCTAAACAGTTAGATGACATTGTTGAGGTTAGAAGATTGGTTATTACTCCAACAAAAGCCTATTGTGTACCACCAGAAGTTGAATTGTCCAACAGGGTTCTCAGAAGATTCAGAGATGTTTCAGATCGTTTCTTGAGAGTAGCCTTTATGGATGAGGGCATGCAAACAATTAATGTGAATGCTCTTAATTATTATGTTGCTCCAATAGTGAAGGAGATCACGTCAAACTCTTTTCCACAAAAGACAAGAATATATAAAAGGATCAAGACCATCCTGGAAGAAGGATTTCACTTTTGTGGCCGAAAGTATTCGTTTTTGGCCTTTTCATCCAATCAACTTCGAGATCGTTCTGCTTGGTTTTTTGCTGAAGACAAAAACATAAGTTGCGTTAAAATACGAAATTGGATGGGCAGATTTAATCAAAGAAATATAGCAAAATGTGCTGCCAGGATGGGACAATGCTTCTCATCTACTTATGCAACGGTTGAAGTTGTCGCAAATGAAGTTAACTCCATGCTGCCTGATGTTGAGAGGAATAATTATGTTTTCTCTGATGGCATTGGTATCATCACTCCTGATCTTGCCAGTGAAGTTGCAGAAAAATTGAAATTGGACAGTGTACCCTCTGCTTACCAGATCAGATATGCTGGTTTTAAAGGGGTTGTAGCCTCTTGGCCTGCTAAAGGGGATGGGATCAGACTTTCTTTGAGGCCTAGTATGGACAAGTTTCAATCTACTCATACTATCTTAGAGATTTGTGCTTGGACTAGGTTTCAGCCTGGTTTTCTTAACAGGCAGATCATAACATTGCTTTCAGCACTGAGTGTACCTGATGAAATATTTTGGAAAATGCAGGAGGCTATGCTTTTGAGGTTAAATCAAATGCTTCTGGATCCAGATATCGCTTTTGATGTTCTCACCAAATCATGTGCTGAGCATGGAAATGCTGCAGCAATAATGTTAAGTTGTGGCTTCAGTCCCCAAACTGAACCTCATCTCAGAGGTATGTTAACTTCTGTACGTGCTGCACAGCTTTGGGGACTTAGAGAAAAGTCCAGGATTTTTGTATCATCTGGGCGATGGTTGATGGGTGTCTTAGATGAGTTGGGTGAGCTTGAACAAGGGCAGTGCTTTGTTCAAGTGTCTACTCCTTCTATTGAAAATTGTTTCTCAAAGCATGGCTCAAGATTTTCAGAAACAAAGAGCCTGCAAGTAGTTAAAGGTTTGGTGGTTATAGCCAAAAATCCTTGTCTTCATCCTGGAGACGTAAGAGTTTTGGAGGCAGTTGATGCCCCTGGTTTGCATCATTTATACGATTGTCTTGTTTTCCCTCAAAAGGGTGACAGACCCCATACAAATGAAGCTTCTGGAAGTGACCTTGACGGGGATCTATATTTTGTCACGTGGGATGAAAATCTTATTCCACCAAGTAAGAGGAGCTGGATACCTATGGCTTATGCTGCTCAAGAAAGCAAGCTTCAGACACGTCAAGTCACTACCCGAGACATCATAGATTTTTTTGCCAAAAACATGGTAAATGAGCATTTGGGTGCAATCTGCAATGCACATGTGGTACATGCTGATTGCAGTGACTACGGTGCCTTGGATGAGAAATGTATATGCTTGGCTGAGCTAGCAGCCACTGCTGTTGATTTTCCAAAGACCGGGAAGGTTGTCTCCATGCCTCCTCAGCTGAAACCAAAACTGTATCCTGATTTCATGGGGAAAGAGCAGCACCAGTCTTACAAGTCCAATAAAATCCTGGGTAGACTTTACCGGCGTATCAGAGATGCTTATGATAACGATATTGATTCTGCTGATTTGAATTATGTGACAGGTGATATACCATACGACAAAGATCTTGAGGTTCCTGGATCTGGTGATTTTATTGATGATGCGTGGGAACAAAAGTGCTCATACGATGCCCAGTTGAGTGCACTACTTGGTCAATACAAAGTAAAAAGAGAAGAAGAAGTTGTCACTGGACAGATCTGGTCCATGCCAAAATACAACAGTAGGAAGCAAGGGGAACTTAAGGAGAGGTTGAAACATTCATACAGTGCCCTGAAAAAGGAATTTAGGCAAACTTTTGAGAAATTGAATTCAGATGGTGCAGAATTAAGTGAGGAAGATAAAAACTTACTGTATGAGCAGAAAGCTTCAGCCTGGTATCAGGTTACATATCATCCTATATGGGTGAAAAAATCCCTTGATCTGCAAGATAAGTCCCCAGGGAACCAAGAGCCAGATAGTTTCGGAAGTGTGGTGATGTTGAGTTTTCCTTGGATTGCAGTTGATTACCTAGCTCGCACGAAGATAAAGCATCGAACAGTTGGAAATTTTGATTCAACCAAGCCAGTGGATTCACTGGCAAAGTATCTGTCTGAAAGGTTATAA 3681 0.407 MEKQKQSGKKRERHTENLQTTENMDLEGSEKDSVVTQVSIGGFDSEVTASDLVTYLEDKIGLVYRCRLKTSWTPPESYPEFNIIDTAQIKKTDVYQKVEPHAFVHFASPGSVTTALNASGCCDLFLKNQPLKVSRGPENPFFLNQRRRTTIPFKMSDVLVEIGTLVGPEEFFVAWRGPDKGVKFLVDPFDGQCKICFNRDTAFSFKGIEKKAVIKCDFQVGFLVRDINEIRRYNDTSYLVVLLHLASSPWVWYRTADDDIEELVPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRYGAKLMKAMLYLKGQRVQVQEIPLRRPLRILDEPDFGVSMSDAFFYINFQKGIAFDILFLVNAIIHKGIFNQHRLSDRFFELLRNQPMELNVAALKHLCSYKRPVFDATKRLKTVQDWLLRNPKLYQGSKQLDDIVEVRRLVITPTKAYCVPPEVELSNRVLRRFRDVSDRFLRVAFMDEGMQTINVNALNYYVAPIVKEITSNSFPQKTRIYKRIKTILEEGFHFCGRKYSFLAFSSNQLRDRSAWFFAEDKNISCVKIRNWMGRFNQRNIAKCAARMGQCFSSTYATVEVVANEVNSMLPDVERNNYVFSDGIGIITPDLASEVAEKLKLDSVPSAYQIRYAGFKGVVASWPAKGDGIRLSLRPSMDKFQSTHTILEICAWTRFQPGFLNRQIITLLSALSVPDEIFWKMQEAMLLRLNQMLLDPDIAFDVLTKSCAEHGNAAAIMLSCGFSPQTEPHLRGMLTSVRAAQLWGLREKSRIFVSSGRWLMGVLDELGELEQGQCFVQVSTPSIENCFSKHGSRFSETKSLQVVKGLVVIAKNPCLHPGDVRVLEAVDAPGLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMAYAAQESKLQTRQVTTRDIIDFFAKNMVNEHLGAICNAHVVHADCSDYGALDEKCICLAELAATAVDFPKTGKVVSMPPQLKPKLYPDFMGKEQHQSYKSNKILGRLYRRIRDAYDNDIDSADLNYVTGDIPYDKDLEVPGSGDFIDDAWEQKCSYDAQLSALLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQTFEKLNSDGAELSEEDKNLLYEQKASAWYQVTYHPIWVKKSLDLQDKSPGNQEPDSFGSVVMLSFPWIAVDYLARTKIKHRTVGNFDSTKPVDSLAKYLSERL* 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1253 1226 PANTHER RNA-DEPENDENT RNA POLYMERASE 30 1225 IPR007855 GO:0003968
Apr5g1253 1226 MobiDBLite consensus disorder prediction 1 31 - -
Apr5g1253 1226 Coils Coil 1118 1138 - -
Apr5g1253 1226 CDD RRM_SF 38 134 - -
Apr5g1253 1226 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 30 1225 - -
Apr5g1253 1226 Pfam RNA dependent RNA polymerase 443 1023 IPR007855 GO:0003968
Apr5g1253 1226 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1253 Apr-Chr5 16910935 16916029 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1253 K11699 - gmx:100795178 2188.69