Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1241 ATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAATCACCTCAACTTTCAGAGAAGAGATTCGTGCCAACGGTGTGGGGAACCAAGAAGTGGTGACTATGGTGGAAGCTTTGGGGGAAGAGGGTCTTCTTCCTTTGGCTTTACACCTGGTCCTGATATTCGTCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTTGCCAGCCGCTCAAGCTGCTTCAAGTGTGGTGCCCCCAAGGAGGATTCCTCCGCCGGAGCATTCGACGCCGACATGCCTCGAATGAGAGCCTACGGCTTCGGCGGCGGCTCCTCCGCCCGCCCCGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCTGGATGCAACGAGCATAACTTCGCCAACAGAATGGAGTGTTACCGATGCAATGCACCGAGGGACTCTAGTAGTGGCAGGTCTCCCTATTCATCGTAG 468 0.562 MSRPGDWNCRTCNHLNFQRRDSCQRCGEPRSGDYGGSFGGRGSSSFGFTPGPDIRPGDWYCTVGNCGAHNFASRSSCFKCGAPKEDSSAGAFDADMPRMRAYGFGGGSSARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSSSGRSPYSS* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1241 155 ProSiteProfiles Zinc finger RanBP2 type profile. 115 146 IPR001876 -
Apr5g1241 155 PANTHER ZINC FINGER PROTEIN 1 148 - -
Apr5g1241 155 SUPERFAMILY Ran binding protein zinc finger-like 51 87 IPR036443 -
Apr5g1241 155 SMART zf_4 5 29 IPR001876 -
Apr5g1241 155 SMART zf_4 117 143 IPR001876 -
Apr5g1241 155 SMART zf_4 57 83 IPR001876 -
Apr5g1241 155 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Apr5g1241 155 SUPERFAMILY Ran binding protein zinc finger-like 2 33 IPR036443 -
Apr5g1241 155 ProSiteProfiles Zinc finger RanBP2 type profile. 55 86 IPR001876 -
Apr5g1241 155 SUPERFAMILY Ran binding protein zinc finger-like 108 147 IPR036443 -
Apr5g1241 155 Pfam Zn-finger in Ran binding protein and others 115 144 IPR001876 -
Apr5g1241 155 Pfam Zn-finger in Ran binding protein and others 3 30 IPR001876 -
Apr5g1241 155 Pfam Zn-finger in Ran binding protein and others 55 86 IPR001876 -
Apr5g1241 155 ProSitePatterns Zinc finger RanBP2-type signature. 119 140 IPR001876 -
Apr5g1241 155 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 1 148 - -
Apr5g1241 155 Gene3D - 108 146 - -
Apr5g1241 155 Gene3D - 2 32 - -
Apr5g1241 155 Gene3D - 52 87 - -
Apr5g1241 155 ProSitePatterns Zinc finger RanBP2-type signature. 59 80 IPR001876 -
Apr5g1241 155 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1241 Apr-Chr5 16837316 16838684 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1241 - - gmx:100811107 285.419