Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1229 ATGGCCACTGCTCCTTCTGCTTACCCATTTGGAGTCCCTTACCACTCCCACGTTGGAACAGTGGATTGCATAACTTCCCAGTTTCCCCTTCACCTTCACCTTTCAACCACTCCCCTGTGCGCACGTTCTACTTCTAAGGGATTAATTGATCGAGTATGTGCACAACCTGATGATGGTTTCCACTGGGACGAAGTTCCAACACCCATTCTTGACATGGTTGAAAACCCTCTTTGCTTGAAGAACTTATCTCTTAAGGAACTGAAACAACTAGCAGTTGAAATCCGTTCGGATTTGTTTTCGATCATGTCAGGTACACAAATATCACTGAAAGCAAGTATGGCAGTGGTGGAGCTGACAGTTGCAATACATCACGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTTGGGGATCAAACATATGTGCATAAAATTCTTACAGGAAGGCGATCCCTCATGAACACAATGAGACAAAAGAATGGCCTTTCTGGTTTTACTTCCCGATTTGAGAGTGAATATGATGCATTTGGTGCTGGTCATGGATGCAACAGTATTTCTGCTGGACTTGGCATGGCAGTGGCACGGGATATTAAAGGGAGGCGAGAACGTGTCGTTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGTGTACGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTGGTGATTTTGAATGATAGCCGTCACTCTTTACTACCAAAACTTGAAGAGGGTCCGAAGACATCTGTCAGTGCCCTATCTAGTACCCTGAGCAAGCTCCAGTCCAGTCAGTCTTTCCGAAGATTTAGGGAAGCTGCTAAGGGTGTTACAAAACGAATTGGGAGAGGTATGCATGAGTTGGCAGCTAAAGTTGATGAATATGCTCGTGGTATGATGGGTCCACTTGGTTCTACACTTTTTGAAGAGCTTGGGTTGTATTACATAGGCCCTGTAGATGGACACAATATTGAAGATCTAATATGTGTTCTGCAAGAAGTTGCTTTGCTTGATTCAATGGGATCTGTCTTGGTTCATGTGATAACTGATGAAAATCAAGCTAACAAAAATAGTCAGAAAAATGATATAACAGACAGGCAGCAGGATGATTCTGTTAAATCTGAATCCTTAGATAAGGCTGCTCGAACTCAAACATACGATGATTGCTTTGTGGAGACTTTGGTTGCAGAAGCTGAGAAGGACAAAGATATTGTGGTTGTTCATGCAGGAATAACGATGGAGCCATCACTTGAACTGTTTCGGCAAAAATTTCCAGATAGGTTTTTTGATGTGGGAATGGCTGAGCAACATGCAGTCACATTTTCTTCTGGCCTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTTCTACAAAGAGCCTATGACCAGGTGGTACATGACGTTGATCAACAAAAAATTCCAGTGCGTTTTGTCATTACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTCCAATGTGGAGCATTTGATATAACCTTTATGTCATGCTTACCAAACATGATTGTCATGGCGCCTTCTGATGAGGTTGAGCTCATGCACATGGTAGCTACTGCTACTTGTATCAACGATCGGCCAGTCTGCTTTCGGTATCCAAGGGGTGTCCTGGTTGGGGAAGACCGCACTGTAGGTGATGGAATCCCCATCAAGATTGGAAGAGGAAGAGTTCTTATTGAAGGTAAAGACGTTGCTTTACTAGGATATGGGACGATGGTTCAGAACTGCCTTAATGCTCATTCACTTCTTGCTAAGCTTGGTGTTGAGGTGACCGTTGCTGATGCAAGGTTCTGCAAGCCGCTTGACATCAAGCTTCTGAGGCAGCTTTGTAAACACCATTCTTTCCTAATTACTGTTGAGGAAGGATCTATTGGAGGGTTTGGTTCCCATGTTGCTCAGTTTATTGCACTTGATGGACTGCTAGATGGAAGAATTAAGTGGCGACCAATTGTATTACCAGACAGTTATATTCAGCATGCATCACCAAATGAACAGCTTGACCAAGCAGGGTTGACTGGACATCACATTGCTGCCACAGCTTTGAGTTTGCTTGGCCGTACCCGTGAAGCTCTCCTATTTATGTGTCCCTAA 2133 0.4388 MATAPSAYPFGVPYHSHVGTVDCITSQFPLHLHLSTTPLCARSTSKGLIDRVCAQPDDGFHWDEVPTPILDMVENPLCLKNLSLKELKQLAVEIRSDLFSIMSGTQISLKASMAVVELTVAIHHVFHAPVDKILWDVGDQTYVHKILTGRRSLMNTMRQKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRRERVVAVISNWTTMAGQVYEAMSNAGYLDSNMVVILNDSRHSLLPKLEEGPKTSVSALSSTLSKLQSSQSFRRFREAAKGVTKRIGRGMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVALLDSMGSVLVHVITDENQANKNSQKNDITDRQQDDSVKSESLDKAARTQTYDDCFVETLVAEAEKDKDIVVVHAGITMEPSLELFRQKFPDRFFDVGMAEQHAVTFSSGLSCGGLKPFCIIPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATCINDRPVCFRYPRGVLVGEDRTVGDGIPIKIGRGRVLIEGKDVALLGYGTMVQNCLNAHSLLAKLGVEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDGRIKWRPIVLPDSYIQHASPNEQLDQAGLTGHHIAATALSLLGRTREALLFMCP* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1229 710 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 67 450 IPR029061 -
Apr5g1229 710 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 388 577 IPR029061 -
Apr5g1229 710 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 69 699 IPR005477 GO:0008661|GO:0016114
Apr5g1229 710 Pfam Transketolase, pyrimidine binding domain 390 550 IPR005475 -
Apr5g1229 710 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 70 354 IPR005477 GO:0008661|GO:0016114
Apr5g1229 710 Pfam Transketolase, C-terminal domain 567 690 IPR033248 -
Apr5g1229 710 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 2 709 - -
Apr5g1229 710 MobiDBLite consensus disorder prediction 367 384 - -
Apr5g1229 710 MobiDBLite consensus disorder prediction 361 384 - -
Apr5g1229 710 Gene3D - 388 557 - -
Apr5g1229 710 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 2 709 IPR005477 GO:0008661|GO:0016114
Apr5g1229 710 CDD TPP_PYR_DXS_TK_like 395 548 - -
Apr5g1229 710 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 72 696 IPR005477 GO:0008661|GO:0016114
Apr5g1229 710 CDD TPP_DXS 109 354 IPR005477 GO:0008661|GO:0016114
Apr5g1229 710 SMART Transket_pyr_3 389 554 IPR005475 -
Apr5g1229 710 SUPERFAMILY TK C-terminal domain-like 562 698 IPR009014 GO:0003824
Apr5g1229 710 Gene3D - 62 359 - -
Apr5g1229 710 Gene3D - 567 698 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1229 Apr-Chr5 16745625 16751809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1229 431 649 Acyl Lipid Metabolism Gene Families AT1G55510 24.686 1.15e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1229 K01662 - gmx:100793268 1224.54